PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01117.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 553aa    MW: 58935.4 Da    PI: 7.3194
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01117.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY1061.9e-33219275259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     dDgynWrKYGqK+vkgse+prsYY+Ct++gCp+kkkvers  d++++ei+Y+g+Hnh 
  Pahal.E01117.1 219 DDGYNWRKYGQKQVKGSENPRSYYKCTFPGCPTKKKVERSL-DGQITEIVYKGTHNHA 275
                     8****************************************.***************7 PP
2WRKY106.21.6e-33381439159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++prsYY+Ct++gCpv+k+ver+++d ++v++tYeg+Hnh+
  Pahal.E01117.1 381 LDDGYRWRKYGQKVVKGNPNPRSYYKCTTPGCPVRKHVERASHDLRAVITTYEGKHNHD 439
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.7E-29210277IPR003657WRKY domain
PROSITE profilePS5081124.283213277IPR003657WRKY domain
SuperFamilySSF1182901.96E-25214277IPR003657WRKY domain
SMARTSM007741.6E-36218276IPR003657WRKY domain
PfamPF031061.4E-25219274IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-37366441IPR003657WRKY domain
SuperFamilySSF1182901.31E-29373441IPR003657WRKY domain
PROSITE profilePS5081138.492376441IPR003657WRKY domain
SMARTSM007744.9E-39381440IPR003657WRKY domain
PfamPF031061.0E-25382439IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009753Biological Processresponse to jasmonic acid
GO:0009788Biological Processnegative regulation of abscisic acid-activated signaling pathway
GO:0009938Biological Processnegative regulation of gibberellic acid mediated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MTTSSSGSIE APANTRPGSF SFASTSFTDM LGSSAAAATG ASRYKAMTPP SLPLSPPPLS  60
PSSFFNIPGG LNPADFLDSP ALLTSSFFPS PTTNAFASQQ FSWLAPQGAE QGGKDEQRQS  120
YPGFSFQTAP TTEEAVRTTT TFQQPPVAPG PLGEEAYRSQ QQQQPWGYQQ QQPGMDAGSS  180
QAAYGGPFQA GSSDAAAMAP HAPASGGYNQ AQSQRRSSDD GYNWRKYGQK QVKGSENPRS  240
YYKCTFPGCP TKKKVERSLD GQITEIVYKG THNHAKPQNT RRNSSAAAQL LQASGGDASE  300
HSFGGTPVAT PENSSASFGD DDAGVGSPRA GNPGGDEFDE DEPDSKRWRK DGDGEGISMA  360
GNRTVREPRV VVQTMSDIDI LDDGYRWRKY GQKVVKGNPN PRSYYKCTTP GCPVRKHVER  420
ASHDLRAVIT TYEGKHNHDV PAARGSAALY RPAPPPADTY LAAAAGVRPP APMAYQTGQQ  480
YGFGGSSSFG LGGGAPAQQG GGFGFPSGFD NPMGSYMSQH QQQQRQNDAM HASRAKEEPR  540
EDMFFPQSMM YN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-37210442878Probable WRKY transcription factor 4
2lex_A2e-37210442878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Negative regulator of both gibberellic acid (GA) and abscisic acid (ABA) signaling in aleurone cells, probably by interfering with GAM1, via the specific repression of GA- and ABA-induced promoters (By similarity). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000250|UniProtKB:Q6QHD1}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in aleurone cells, embryos, roots and leaves (PubMed:25110688). Slightly down-regulated by gibberellic acid (GA) (By similarity). Accumulates in response to jasmonic acid (MeJA) (PubMed:16919842). {ECO:0000250|UniProtKB:Q6IEQ7, ECO:0000269|PubMed:16919842, ECO:0000269|PubMed:25110688}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0539940.0BT053994.1 Zea mays full-length cDNA clone ZM_BFc0103O21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819311.10.0WRKY transcription factor WRKY24-like
SwissprotQ6B6R40.0WRK24_ORYSI; WRKY transcription factor WRKY24
TrEMBLA0A2S3HQE00.0A0A2S3HQE0_9POAL; Uncharacterized protein
STRINGPavir.Eb03590.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29923687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38470.15e-95WRKY DNA-binding protein 33
Publications ? help Back to Top
  1. Basu S,Roychoudhury A
    Expression profiling of abiotic stress-inducible genes in response to multiple stresses in rice (Oryza sativa L.) varieties with contrasting level of stress tolerance.
    Biomed Res Int, 2014. 2014: p. 706890
    [PMID:25110688]