PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01126.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

LBD

Protein Properties

Length: 251aa MW: 25983.3 Da PI: 6.6198

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01126.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	127.3	7.3e-40	57	156	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C++apyf ++p+kfa+vhk+FGasnv+k+l ++ e r da+sslvyeA+ r+rdPvyG++g i+ lqqq++ l+ael+ Pahal.E01126.1 57 PCAACKLLRRRCAQECPFAPYFSPHEPHKFAAVHKVFGASNVSKMLLDVAEGVRADAASSLVYEANLRLRDPVYGCMGAISVLQQQVNALEAELE 151 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e Pahal.E01126.1 152 AVRAE 156 99987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.576	56	157	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.7E-40	57	154	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MSTERERLDE IGKKIKREPD TAALALAAAS ASTAPADNRA PRRLGLGLGG ALNTVTPCAA 60 CKLLRRRCAQ ECPFAPYFSP HEPHKFAAVH KVFGASNVSK MLLDVAEGVR ADAASSLVYE 120 ANLRLRDPVY GCMGAISVLQ QQVNALEAEL EAVRAEILKH RYRQAGAGAG LVDDARATAS 180 FAAPAPAPVH AGDVVSVVEA GQEVACGGAA GAPGMSASSA VYVAEAEQQP SSTTDHYSSL 240 NPSEHAAYFG *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-41	57	160	11	114	LOB family transfactor Ramosa2.1
5ly0_B	4e-41	57	160	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT068699	1e-170	BT068699.1 Zea mays full-length cDNA clone ZM_BFb0375M24 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818142.1	0.0	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	5e-70	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2S3HQG2	1e-180	A0A2S3HQG2_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DF46	1e-180	A0A2T7DF46_9POAL; Uncharacterized protein
STRING	Pavir.Eb03580.1.p	1e-140	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	6e-63	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Pahal.E01126.1

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]