PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01152.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 352aa    MW: 38300.9 Da    PI: 7.1619
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01152.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY60.14.2e-19113175259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSS....TTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaed....pkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK++++ +f+r Y++C  + +C++kkkv++++      p ++e+tY +eH+++
  Pahal.E01152.1 113 KDGYQWRKYGQKKIQNYNFSRYYFKCNRHrRCEAKKKVQQQDGGqgrlPPMFEVTYVNEHTCH 175
                     8*************************9888*********998542223579**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-22103176IPR003657WRKY domain
SuperFamilySSF1182908.37E-19108175IPR003657WRKY domain
SMARTSM007746.4E-21112176IPR003657WRKY domain
PfamPF031061.2E-20113175IPR003657WRKY domain
PROSITE profilePS5081113.173114152IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MAFDPDSKLS DLLAGGYHLN TRLQALLISR PLDRRGQEEA MAFSQELSRV FMASMSMLNS  60
NAVAPEVRTG NSSGVSTPAK DKRARSDNEV VTPSKKSREE GLTRKELTPS PHKDGYQWRK  120
YGQKKIQNYN FSRYYFKCNR HRRCEAKKKV QQQDGGQGRL PPMFEVTYVN EHTCHELRAS  180
DDAAARMVSP WTTSRHHALA GVVDTARGGD GGGLFDLLPH IIGGGCAEEN EAMVSCLAAV  240
VSGSVPSPPP PSGWPPAPEV SASDPGASFV PPAASGRSAS VADDGAMMMM VVDDRGFSWD  300
PWWSFCPLEE AAGHQLVTNR NQHHGPMHMD DAGGLADAVW PEHTCGAWRR A*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004972234.11e-148WRKY transcription factor WRKY62
TrEMBLA0A2S3HQI00.0A0A2S3HQI0_9POAL; Uncharacterized protein
STRINGPavir.Ea03256.1.p1e-150(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132432632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-11WRKY DNA-binding protein 70