PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01153.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 260aa    MW: 28867.7 Da    PI: 5.0999
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01153.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY63.73.1e-2065124358
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-S.SSTTEEEEEEES--SS CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversa.edpkvveitYegeHnh 58 
                     Dg+ WrKYGqK++k++e+pr Y+rC+++   +C++ k +++++ +dp + e+tY+ eH++
  Pahal.E01153.1  65 DGHLWRKYGQKKIKDAEYPRLYFRCSYRgdrQCMASKLLQQKNgDDPPLYEVTYTYEHTC 124
                     9**************************99999******9877637899**********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182908.89E-2156127IPR003657WRKY domain
Gene3DG3DSA:2.20.25.805.2E-2157127IPR003657WRKY domain
SMARTSM007744.2E-3063126IPR003657WRKY domain
PfamPF031061.7E-2165124IPR003657WRKY domain
PROSITE profilePS5081116.09965127IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKTEQSFEFG ELSAQDAMGS ASESSYSPPG AVFGVSPPES SPRGRNNRRR DRPSWVKLTY  60
TPYFDGHLWR KYGQKKIKDA EYPRLYFRCS YRGDRQCMAS KLLQQKNGDD PPLYEVTYTY  120
EHTCGAPPIP SPDIVAEPPA ASTEGLVLRF DSPGGHGGDA QMMQQQGQYQ QSSSRSPFMM  180
LSFGSSCQAH DQQPAFHSDL EPGLSSSLPN EGLQAPPPAN GDGDMFPTWD SFTYDFDSHV  240
HFGDHSRLPY NSNYGCDDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-15651241068OsWRKY45
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818994.10.0probable WRKY transcription factor 48
TrEMBLA0A2T8IJP10.0A0A2T8IJP1_9POAL; Uncharacterized protein
STRINGSi005138m1e-145(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115292433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22570.15e-17WRKY DNA-binding protein 38