PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01167.2

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

WOX

Protein Properties

Length: 202aa MW: 22786.3 Da PI: 7.137

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01167.2	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68	1.2e-21	22	82	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++WFqNrRa+ k+ Pahal.E01167.2 22 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWFQNRRARSKR 82 89***************99************************************97 PP
2	Wus_type_Homeobox	102.1	4e-33	21	84	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++WFQNr+aR+++kq Pahal.E01167.2 21 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWFQNRRARSKRKQ 84 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.5E-18	17	90	IPR009057	Homeodomain-like
PROSITE profile	PS50071	14.9	18	83	IPR001356	Homeobox domain
SMART	SM00389	2.7E-14	20	87	IPR001356	Homeobox domain
SuperFamily	SSF46689	8.55E-19	21	86	IPR009057	Homeodomain-like
CDD	cd00086	6.43E-15	22	84	No hit	No description
Pfam	PF00046	1.9E-19	22	82	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 202 aa Download sequence Send to blast
MRFSNLYCDP LIIPGGHKIT ARQRWQPTPM QLQILENIFD QGNGTPSKQK IKEITAELSH 60 HGQISETNVY NWFQNRRARS KRKQAAALPN NNTESEAEVD EEALTDKKPK SDRLLHENKA 120 MNVHSAERIS GMHHFDADHD QIGGMMYGSN ENGMRSSGGS GQMSFYENIM SNPRIDHFPG 180 KVESSRSFSH LQHGEGFDMF G*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	83	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00669	PBM	Transfer from GRMZM2G038252	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT063919	0.0	BT063919.1 Zea mays full-length cDNA clone ZM_BFc0120C21 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025815130.1	1e-151	WUSCHEL-related homeobox 8-like
Swissprot	Q5QMM3	1e-102	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	A0A2S3HQI6	1e-150	A0A2S3HQI6_9POAL; Uncharacterized protein
STRING	Pavir.Eb03552.1.p	1e-144	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	6e-38	WUSCHEL related homeobox 13

Link Out ? help Back to Top
Phytozome	Pahal.E01167.2

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]