PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01230.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bZIP
Protein Properties Length: 306aa    MW: 33479.3 Da    PI: 6.937
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01230.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.48.4e-10181221545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka+i++Le    +L++  ++L
  Pahal.E01230.2 181 KTLRRLAQNREAARKSRLRKKAYIQNLESSRLKLTQLEQEL 221
                     7889************************9777777666555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.5E-7170224No hitNo description
SMARTSM003383.3E-8177240IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.312179223IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.44E-7181224No hitNo description
PfamPF001705.6E-7181221IPR004827Basic-leucine zipper domain
CDDcd147081.59E-25181233No hitNo description
PROSITE patternPS000360184199IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0009627Biological Processsystemic acquired resistance
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MESRQGGSAA EDAGGAMPSF GPPQHSIHTD MNNMQPSRVT DFGALAQSAG FRIEDLANLN  60
TSTLFNLKPN THTINNNPLQ FGSYGKPISP SHINATTAAT AAARIDPQSL EQQTGAQQNL  120
VALPTGNIEN WGESAMADSP MTDTSTDPDT DERNQMFEQG LVAGPTASDS SDKSRDKLDQ  180
KTLRRLAQNR EAARKSRLRK KAYIQNLESS RLKLTQLEQE LQRARQQGIF ISTSGDQPQS  240
ANGNGWAQRT NGTSYSNTLL ELPKNYCSFF KIRSLQAVLP LKTLEIVCLI PSYCQFPFMF  300
MFSDP*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. Binds to the hexamer motif 5'-ACGTCA-3' of histone gene promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00492DAPTransfer from AT5G06950Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0344560.0BT034456.1 Zea mays full-length cDNA clone ZM_BFc0173A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816950.11e-177transcription factor TGAL1 isoform X1
SwissprotQ415581e-113HBP1C_WHEAT; Transcription factor HBP-1b(c1) (Fragment)
TrEMBLA0A2S3HR671e-175A0A2S3HR67_9POAL; Uncharacterized protein
TrEMBLA0A2T7DFG01e-175A0A2T7DFG0_9POAL; Uncharacterized protein
STRINGSb03g037560.11e-153(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12250.56e-21TGACG motif-binding factor 6