PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01299.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 178aa    MW: 18451.8 Da    PI: 10.1456
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01299.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.31.1e-193383256
             AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56
                    +y+GVr ++ +gr++AeIrd ++    ++r++lg+f+t+ eAa a+++a++ l+g+
  Pahal.E01299.1 33 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPVEAALAYDRAARTLRGA 83
                    7********.**********883....5*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.37E-303292No hitNo description
SuperFamilySSF541713.73E-223392IPR016177DNA-binding domain
PROSITE profilePS5103221.9443390IPR001471AP2/ERF domain
SMARTSM003801.1E-333396IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-313392IPR001471AP2/ERF domain
PfamPF008471.1E-123382IPR001471AP2/ERF domain
PRINTSPR003674.3E-103445IPR001471AP2/ERF domain
PRINTSPR003674.3E-105672IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MDPTLRAVLS HGGAGGGDGG GGGARGGGGS DAHYRGVRKR PWGRYAAEIR DPWKKTRVWL  60
GTFDTPVEAA LAYDRAARTL RGAKAKTNFP DNAGGHLHRS QHLHLATLPR QPPPQAVMFG  120
GVGLDCPSPW HFVYLQPPAA DATTHPAAAP PPSTALELGT GPSRGGLPFD LNVAPSC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-213390563ATERF1
3gcc_A3e-213390563ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282618e-95KJ728261.1 Zea mays clone pUT6538 AP2-EREBP transcription factor (EREB158) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818539.11e-124ethylene-responsive transcription factor 4-like
TrEMBLA0A2S3HQX61e-123A0A2S3HQX6_9POAL; Uncharacterized protein
TrEMBLA0A2T7DFL81e-123A0A2T7DFL8_9POAL; Uncharacterized protein
STRINGPavir.Ea03148.1.p5e-76(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28360.11e-33ERF domain protein 12