PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01439.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 256aa    MW: 27969.8 Da    PI: 10.7792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01439.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.94.7e-10116164455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      h +rEr RR+r+ ++f+ L  llP+     s K  K +i+  A  YI++L+
  Pahal.E01439.2 116 RHIMRERLRRERLSQGFADLHALLPPG---ASSKGGKNDIVGAAAGYIRELE 164
                     599***********************6...69*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.57E-14111181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.027112163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-10114180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-7116164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-6118169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MADPFFYFGH DDDQDGANED YLTGLGLVLP PELPAGSAFD AYQRRRAPTL LESPLMMGRG  60
RYNNSGGGAN VHRRMFGYLR RIVRHDAAAG PVHPAPATLV PPPSQPPRPR SSSRFRHIMR  120
ERLRRERLSQ GFADLHALLP PGASSKGGKN DIVGAAAGYI RELERRKGWL RARNQELLER  180
AASRWSGGTA RNAGSGDMVV KVRAESEDRA AAVDAFETVL RRLKAMGELR VTAIRSCFCA  240
GGMWMNVGVE GQGSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121126RLRRER
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818224.10.0transcription factor BHLH148-like
TrEMBLA0A2S3HR710.0A0A2S3HR71_9POAL; Uncharacterized protein
STRINGPavir.J18322.1.p1e-116(Panicum virgatum)