PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01466.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 233aa    MW: 23617 Da    PI: 8.9246
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01466.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260116.81.3e-36431531100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf...........paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 
                     +C aCk+lrr+C+++Cv+ap+f           + + +++fa+vhk+FGasnv k+l+++p   r+da+s+++yeA+ar+ dPvyG+vg+il+lq
  Pahal.E01466.1  43 PCGACKFLRRRCVPGCVFAPHFggggvrehragAGAGAAQFAAVHKVFGASNVAKMLSRVPVALRRDAASTVCYEAQARIADPVYGCVGTILALQ 137
                     7*************************988876444557********************************************************* PP

          DUF260  85 qqleqlkaelallkee 100
                     +q++ ++ael+ +++e
  Pahal.E01466.1 138 HQVALVQAELSIAQTE 153
                     ***********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.79942154IPR004883Lateral organ boundaries, LOB
PfamPF031953.8E-4043151IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSRAMQPPGK RAGAAAAPAA AAGPAHAQAQ AAEEAPPGSP GAPCGACKFL RRRCVPGCVF  60
APHFGGGGVR EHRAGAGAGA AQFAAVHKVF GASNVAKMLS RVPVALRRDA ASTVCYEAQA  120
RIADPVYGCV GTILALQHQV ALVQAELSIA QTELLNRRLA LATVNPAYSA ASPTSQMVNC  180
GSLSQAVDFI DVEPAVRGLP PPLLPSQQPQ RGEQDGGGSP TMDVFSHNVL GK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-37351551112LOB family transfactor Ramosa2.1
5ly0_B6e-37351551112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815329.11e-165LOB domain-containing protein 20-like
SwissprotQ9SRV35e-50LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A2S3HRB51e-163A0A2S3HRB5_9POAL; Uncharacterized protein
STRINGSi004290m1e-113(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140852526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.16e-38LOB domain-containing protein 20