PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01553.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family CPP
Protein Properties Length: 517aa    MW: 56166.4 Da    PI: 8.8609
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01553.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR413.9e-13111150242
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                     +kk CnC++s+Clk+YCeCfa+g++C+  C+C++C+N+ e+
  Pahal.E01553.2 111 KKKCCNCRNSRCLKLYCECFASGAHCDG-CNCTNCFNNPEN 150
                     799*************************.********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011141.7E-13110150IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163423.347111210IPR005172CRC domain
PfamPF036382.5E-9112147IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MAAAAAAVSR ALQPRTLPVG LQHPPHHARA AVPMGVPQQL HPRVLPVMRP HQVVGHVPLP  60
RHAVPVAVPV PQLRPVPPQP VQRPPVAVPL KPESPKPRLR LYEGKDSTPT KKKCCNCRNS  120
RCLKLYCECF ASGAHCDGCN CTNCFNNPEN EVARREAIDA TLERNPDAFR PKIGSSPHAN  180
RNNEVSSDLP LVGKHNKGCH CKKSGCLKKY SVNGAIGATG FSSPSTSRKR KHIDPSLDHS  240
NKEYVAQKNG HLPQKNAVPD GSIPISQSVH PPTLGPFKVT YRPLLADIVQ EEDIKELCKL  300
LVVVSGEAAK AYAGRKTQEE RDAEKEDEGG GQKEDDKAGS RGSTNHDREG NNQDPDHKAS  360
INDNSSRGTH TGKAVLEESR PNCADDQKSN RPMSPGTLAL MCDEQDTMFT TSQNAAPQQT  420
VADNQNQSEL YAEQERVVLT EFRDCLRKLV TCGRMKEERY SMAIKSETSG HPGQVNGVSR  480
VPYPRVDVPA VVKTFPQGSS SHPVAGKPVT GHLDKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-18103210299Protein lin-54 homolog
5fd3_B3e-18103210299Protein lin-54 homolog
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00045PBMTransfer from AT4G29000Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815944.10.0LOW QUALITY PROTEIN: protein tesmin/TSO1-like CXC 5
TrEMBLA0A2T8IK060.0A0A2T8IK06_9POAL; Uncharacterized protein
STRINGPavir.Eb03237.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.15e-78Tesmin/TSO1-like CXC domain-containing protein