PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E01596.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 273aa MW: 28975.1 Da PI: 6.3179

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E01596.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.2	1.3e-11	148	196	4	52
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleel 52 kr +r NR +A+rsR RK+++i eLe+ v +L++e + L ++ l Pahal.E01596.1 148 PKRVKRILANRQSAQRSRVRKLQYISELERSVTTLQNEVSVLSPRVAFL 196 5999**********************************88887666555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	4.2E-14	145	209	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.795	147	199	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.03E-12	149	203	No hit	No description
Pfam	PF00170	9.0E-10	149	194	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.5E-13	149	203	No hit	No description
CDD	cd14703	2.13E-23	150	201	No hit	No description
PROSITE pattern	PS00036	0	152	167	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MAQLPPRIPA AVHHWPEGGH HGAAVAWADD FAEFAASRRG AHRRSLSDSV AFVEVAPADG 60 AAGEFDRLDD DQLMSMFPDE AGGGSSSAPG SENGGSSDSD GDKRGGGAPA GGATNGCDDE 120 RSEAADSQAL ASGQAVGAAA STELIRDPKR VKRILANRQS AQRSRVRKLQ YISELERSVT 180 TLQNEVSVLS PRVAFLDQQR TILTVGNSHL KQRIAALAQD KIFKDAHQEA LRKEIERLRQ 240 VYEQQNLKMP AGAAASDHGP PPPVRAEKEL MS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT039136	1e-164	BT039136.1 Zea mays full-length cDNA clone ZM_BFb0374H13 mRNA, complete cds.
GenBank	BT087285	1e-164	BT087285.1 Zea mays full-length cDNA clone ZM_BFb0029G15 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818104.1	0.0	basic leucine zipper 6-like
Swissprot	Q5JMK6	1e-115	BZP06_ORYSJ; Basic leucine zipper 6
TrEMBL	A0A2S3HRL0	0.0	A0A2S3HRL0_9POAL; Uncharacterized protein
STRING	Pavir.Ea02752.1.p	1e-170	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1322	38	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58120.1	1e-55	bZIP family protein

Link Out ? help Back to Top
Phytozome	Pahal.E01596.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]