PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01653.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 1536aa    MW: 167737 Da    PI: 6.6496
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01653.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.27.9e-10770814852
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +  ++ L+ +Fe+++yps++++e LA++lgLt +qV  WF   R
  Pahal.E01653.1 770 GPIVTQKLKVHFEEDPYPSHATKENLAQELGLTFNQVCRWFSSTR 814
                     5667899**********************************8776 PP
2Homeobox32.71.2e-1098810241349
                      HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS
        Homeobox   13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49  
                      + L+++Fek++yps++++e LA++lgLt +qV+ WF 
  Pahal.E01653.1  988 QKLKAHFEKDPYPSRSTKESLAQELGLTFNQVSKWFS 1024
                      78**********************************7 PP
3PHD41.33.6e-14436490150
                     SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50 
                     +C +Cg+   + +++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C +
  Pahal.E01653.1 436 FCGICGSkdVTLQNDIILCDGaCDRGFHQNCLKPPLLTEDIPPGdeGWLCPACVC 490
                     7******64445********66********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.1E-15427492IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.104.2E-14432491IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.101434491IPR019787Zinc finger, PHD-finger
SMARTSM002496.5E-12436489IPR001965Zinc finger, PHD-type
CDDcd155042.32E-28436488No hitNo description
PfamPF006282.4E-11436490IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590437488IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003892.5E-10763824IPR001356Homeobox domain
SuperFamilySSF466892.65E-10766819IPR009057Homeodomain-like
CDDcd000861.93E-10767818No hitNo description
PfamPF000462.9E-7771814IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.609.5E-11774826IPR009057Homeodomain-like
PROSITE profilePS5007112.147777820IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.4E-119701023IPR009057Homeodomain-like
SuperFamilySSF466891.41E-109701028IPR009057Homeodomain-like
PROSITE profilePS5007113.1359731033IPR001356Homeobox domain
SMARTSM003896.7E-119751037IPR001356Homeobox domain
CDDcd000862.83E-119821031No hitNo description
PfamPF000463.8E-89881024IPR001356Homeobox domain
PROSITE patternPS00027010081031IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1536 aa     Download sequence    Send to blast
MGRKGSEVSP SKRYPLRSAH GSGRVLRSAS AKDNKACNEP PNASAAAQSA VSKRRNGSPS  60
VRPNNSVRVL RSASKNKDDA CSEPLNDWTT AKPAANERKS ASPSHMGSTT NTVRVLRSAL  120
KSKDGVCSEP ITNRTAGEPA ANKRKNVSPS KLRSPSNSVR VLLSASKYKE ETYTEPLNDN  180
TAVDPGTNRR KIASPSKVGS PISPNNTVRV LRSALKSKNE ACSEPLNDST VGQPTVKRRK  240
TGSPLKVASP VSSARVLRST SERKNDACNE PLNDSTAAQP AAGKGKGETL LKTDSPNIDV  300
RVLRSASGNK NEACSEPVND STSAQKAVRK RKGCRPLNDR SPKKEYVKIC QRVRYILNRM  360
NYQQSFIQAY ASEGWKGQSL EKIRPEKELE RAKEEILQCK LRIREAFRNM DAILSEGKLE  420
ESLFDSAGQI SSEDIFCGIC GSKDVTLQND IILCDGACDR GFHQNCLKPP LLTEDIPPGD  480
EGWLCPACVC KADSIDALNE LQGNKLSIHD SWEKVFPEAA SPANGSKQVG SSDLPPDRIE  540
DNDYNPPLAE GHMNQDRFSA EDDGKVDDLG LPSEDSEDDD FDPAGPDSSE DPKNELNSEE  600
SDFTSDSDDF CAEIAKSCGQ DEVSASPLLD VINRTDRMKT KAVGNHSNEE TSNRAFADME  660
LDQGMVLPIS SRRQVERLDY KKLYDEAYGK ESSGSSDDEE WSGKELLEGS ETDSHGEQLH  720
PAKRCSRRAP AGQQNNEHTP QRERLHGSES EQQTKVFRSN GSSSTGRKFG PIVTQKLKVH  780
FEEDPYPSHA TKENLAQELG LTFNQVCRWF SSTRHYSRVA SAKKEKHPDN HTSENNDSTN  840
VHSMQTREPS AGVMEKLTLD RNDIVPEKPM VQNNLNQCNK KDMPLSGTEI EMESYGQESS  900
DSSDEEWSAF STPRKARLQD NETASPAESL HPAKRCSRRA PDRGQNNEHT PQSEQRHGSA  960
SEQQTDVLCS NSSSSKASKY HFGPIVNQKL KAHFEKDPYP SRSTKESLAQ ELGLTFNQVS  1020
KWFSAIRHYS RGAAAKNKKH PGKNTTENDN STTFDGVQIR EGLVEKTSTD INDMISEKLM  1080
VQINLNEGIE EDIPPSQYTR CEERATMTPT TISRDVGPPG YGPGENFLQV GSRNTCEQNV  1140
ITTPTPILRV DPPGYVRGEN QGNDAPWNTS CEQSMFMSSA TISREVGPPG YGPEQNQGVS  1200
MSSTTISREA GPPGYGSGEN QGSGTSWNTS CEQGMFTSPA IISREVGPPG YGPGENQGNG  1260
TSPNTSCELR MFTSPMAISR EVSLPGYEPG ENQNNGTSWN MSYKKGVFMS PTAISREVGP  1320
PGFGPGENQG SSTSWNMRCE QRMYTIPTAI SREARPPGYG GENQGNGASW SMSYEHGVFS  1380
SPTAISREIG PPGYGPGENQ GNTTSWVTSR KQRMFTSPTT VSSEGGLPGY SIVENQGTGG  1440
SRNIDLEQRV FVTPATISRE VFPPGYNLEQ RVAATPATIS REVFPPGYGP GENQGSGASG  1500
SVRIPQGRSA EKVGFSDEAR KKAIQRELRR RQKFR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1325331KAVRKRK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814926.10.0uncharacterized protein LOC112892070 isoform X2
SwissprotQ8H9910.0HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A2T8IK920.0A0A2T8IK92_9POAL; Uncharacterized protein
STRINGPavir.Eb03127.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43933768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-96Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]