PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01653.3
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family HB-PHD
Protein Properties Length: 1127aa    MW: 123193 Da    PI: 4.7137
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01653.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.65.6e-10361405852
                     -HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
        Homeobox   8 tkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                      +  ++ L+ +Fe+++yps++++e LA++lgLt +qV  WF   R
  Pahal.E01653.3 361 GPIVTQKLKVHFEEDPYPSHATKENLAQELGLTFNQVCRWFSSTR 405
                     5667899**********************************8776 PP
2Homeobox33.28.6e-115796151349
                     HHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHH CS
        Homeobox  13 eeLeelFeknrypsaeereeLAkklgLterqVkvWFq 49 
                     + L+++Fek++yps++++e LA++lgLt +qV+ WF 
  Pahal.E01653.3 579 QKLKAHFEKDPYPSRSTKESLAQELGLTFNQVSKWFS 615
                     78**********************************7 PP
3PHD41.82.5e-142781150
                    SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHT CS
             PHD  1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCke 50
                    +C +Cg+   + +++++lCdg C++ fH++Cl+++l +e++p g   wlC+ C +
  Pahal.E01653.3 27 FCGICGSkdVTLQNDIILCDGaCDRGFHQNCLKPPLLTEDIPPGdeGWLCPACVC 81
                    7******64445********66********************9999*******87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579032.15E-151883IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.9E-142382IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001611.1012582IPR019787Zinc finger, PHD-finger
SMARTSM002496.5E-122780IPR001965Zinc finger, PHD-type
PfamPF006281.7E-112781IPR019787Zinc finger, PHD-finger
CDDcd155041.41E-282779No hitNo description
PROSITE patternPS0135902879IPR019786Zinc finger, PHD-type, conserved site
SMARTSM003892.5E-10354415IPR001356Homeobox domain
SuperFamilySSF466891.84E-10357410IPR009057Homeodomain-like
CDDcd000864.42E-11358409No hitNo description
PfamPF000462.0E-7362405IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.6E-11365417IPR009057Homeodomain-like
PROSITE profilePS5007112.147368411IPR001356Homeobox domain
SuperFamilySSF466899.84E-11561619IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.8E-12561614IPR009057Homeodomain-like
PROSITE profilePS5007113.135564624IPR001356Homeobox domain
SMARTSM003896.7E-11566628IPR001356Homeobox domain
CDDcd000866.01E-12573622No hitNo description
PfamPF000462.7E-8579615IPR001356Homeobox domain
PROSITE patternPS000270599622IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1127 aa     Download sequence    Send to blast
MDAILSEGKL EESLFDSAGQ ISSEDIFCGI CGSKDVTLQN DIILCDGACD RGFHQNCLKP  60
PLLTEDIPPG DEGWLCPACV CKADSIDALN ELQGNKLSIH DSWEKVFPEA ASPANGSKQV  120
GSSDLPPDRI EDNDYNPPLA EGHMNQDRFS AEDDGKVDDL GLPSEDSEDD DFDPAGPDSS  180
EDPKNELNSE ESDFTSDSDD FCAEIAKSCG QDEVSASPLL DVINRTDRMK TKAVGNHSNE  240
ETSNRAFADM ELDQGMVLPI SSRRQVERLD YKKLYDEAYG KESSGSSDDE EWSGKELLEG  300
SETDSHGEQL HPAKRCSRRA PAGQQNNEHT PQRERLHGSE SEQQTKVFRS NGSSSTGRKF  360
GPIVTQKLKV HFEEDPYPSH ATKENLAQEL GLTFNQVCRW FSSTRHYSRV ASAKKEKHPD  420
NHTSENNDST NVHSMQTREP SAGVMEKLTL DRNDIVPEKP MVQNNLNQCN KKDMPLSGTE  480
IEMESYGQES SDSSDEEWSA FSTPRKARLQ DNETASPAES LHPAKRCSRR APDRGQNNEH  540
TPQSEQRHGS ASEQQTDVLC SNSSSSKASK YHFGPIVNQK LKAHFEKDPY PSRSTKESLA  600
QELGLTFNQV SKWFSAIRHY SRGAAAKNKK HPGKNTTEND NSTTFDGVQI REGLVEKTST  660
DINDMISEKL MVQINLNEGI EEDIPPSQYT RCEERATMTP TTISRDVGPP GYGPGENFLQ  720
VGSRNTCEQN VITTPTPILR VDPPGYVRGE NQGNDAPWNT SCEQSMFMSS ATISREVGPP  780
GYGPEQNQGV SMSSTTISRE AGPPGYGSGE NQGSGTSWNT SCEQGMFTSP AIISREVGPP  840
GYGPGENQGN GTSPNTSCEL RMFTSPMAIS REVSLPGYEP GENQNNGTSW NMSYKKGVFM  900
SPTAISREVG PPGFGPGENQ GSSTSWNMRC EQRMYTIPTA ISREARPPGY GGENQGNGAS  960
WSMSYEHGVF SSPTAISREI GPPGYGPGEN QGNTTSWVTS RKQRMFTSPT TVSSEGGLPG  1020
YSIVENQGTG GSRNIDLEQR VFVTPATISR EVFPPGYNLE QRVAATPATI SREVFPPGYG  1080
PGENQGSGAS GSVRIPQGRS AEKVGFSDEA RKKAIQRELR RRQKFR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor involved in the regulation of gibberrelin (GA) signaling. Binds to the 5'-GATC-3' motif of HD16/EL1 promoter. Functions as a positive regulator of GA signaling by suppressing the expression of HD16/EL1, a negative regulator of GA signaling. {ECO:0000269|PubMed:21951842}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by gibberellin. {ECO:0000269|PubMed:21951842}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814926.10.0uncharacterized protein LOC112892070 isoform X2
SwissprotQ8H9910.0HAZ1_ORYSJ; Homeobox protein HAZ1
TrEMBLA0A2T8IK920.0A0A2T8IK92_9POAL; Uncharacterized protein
STRINGPavir.Eb03127.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.11e-64Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wen BQ,Xing MQ,Zhang H,Dai C,Xue HW
    Rice homeobox transcription factor HOX1a positively regulates gibberellin responses by directly suppressing EL1.
    J Integr Plant Biol, 2011. 53(11): p. 869-78
    [PMID:21951842]