PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01752.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 208aa    MW: 21489.1 Da    PI: 7.981
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01752.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY38.52.2e-12173197128
                     ---SS-EEEEEEE--TT-SS-EEEEEE- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCt 28 
                     ldDgy+WrKYGqK vk+s +prs   C+
  Pahal.E01752.2 173 LDDGYRWRKYGQKAVKNSAHPRS---CA 197
                     59********************9...54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.3E-13159198IPR003657WRKY domain
SuperFamilySSF1182905.36E-10166197IPR003657WRKY domain
PROSITE profilePS5081112.989168195IPR003657WRKY domain
SMARTSM007746.0E-5173204IPR003657WRKY domain
PfamPF031062.4E-8174196IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
MENLQGGDDE PHALPGFPYF SMPSPPAVLD APPSLSPDDN QHGALAALQQ ASAAACNSLQ  60
LPPLGPDQLA TVAPTMILPP MVDWPSLLQQ AGLMVGSPPV PGLHLHQQAA AAAQQLDQSG  120
ENDCGEAAAG SSGGTGNKEK ARISGAGRSS SSGKKKVSRP RFAFQTRSAN DILDDGYRWR  180
KYGQKAVKNS AHPRSCASII SCSGIKK*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282448e-46KJ728244.1 Zea mays clone pUT6521 WRKY transcription factor (WRKY22) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817430.11e-150WRKY transcription factor 68-like isoform X3
TrEMBLA0A2S3HRZ21e-148A0A2S3HRZ2_9POAL; Uncharacterized protein
TrEMBLA0A2T7DH461e-148A0A2T7DH46_9POAL; Uncharacterized protein
STRINGPavir.Eb03043.1.p4e-96(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46130.16e-16WRKY DNA-binding protein 43