PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01823.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 434aa    MW: 48085.8 Da    PI: 10.1301
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01823.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B360.82.3e-1919117198
                     EEEE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                     ffkvl     +k++   +p +f++++           +ke s+  tle +sgr+W v +  r++ +++++t+GW +Fv+++ L+e +f+vF++dg
  Pahal.E01823.2  19 FFKVL--MGDFKKR--LIPPDFCKHIpweasrrkaRAVKEASMAATLEGPSGRTWLVVI--RRSVEGTFFTSGWPKFVQDQALRELEFLVFRYDG 107
                     56666..4444443..89*****877*******9988999*******************..*********************************9 PP

                     SSEE..EEEEE- CS
              B3  87 rsefelvvkvfr 98 
                     +++f  + +vf+
  Pahal.E01823.2 108 DTRF--TAMVFD 117
                     9888..666665 PP
2B352.21.1e-16316402598
                     -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +++ +v  s ++++p  f ++h   ++e ++++l+d+ g+ W v +i  ++++r  l++GW  F++ n L+egD +vF+l+g  ef  +v+vfr
  Pahal.E01823.2 316 MSTMHVYYSFMMRFPTGFSRQHL--PRERTDVVLRDPGGKAWVVLYI-PNTRDR--LSRGWCAFARGNCLEEGDYCVFELVGAAEF--RVHVFR 402
                     6788999999*********9995..345679***************4.444455..9***********************997777..999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.4E-1814121IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.92E-1815123IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.29415119IPR003340B3 DNA binding domain
CDDcd100171.61E-1617117No hitNo description
SMARTSM010194.2E-919119IPR003340B3 DNA binding domain
PfamPF023624.6E-1719115IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.0E-21305402IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-23306402IPR015300DNA-binding pseudobarrel domain
CDDcd100173.19E-24310402No hitNo description
PROSITE profilePS5086313.944312404IPR003340B3 DNA binding domain
SMARTSM010194.1E-11312404IPR003340B3 DNA binding domain
PfamPF023622.3E-15314402IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 434 aa     Download sequence    Send to blast
MPAAGRRSPW ATGERRPHFF KVLMGDFKKR LIPPDFCKHI PWEASRRKAR AVKEASMAAT  60
LEGPSGRTWL VVIRRSVEGT FFTSGWPKFV QDQALRELEF LVFRYDGDTR FTAMVFDTSA  120
CEREDLLLGG GGGGDPRRGR QGNKRGRETT GGPSRDAKPK RARKGSVGKE LVPYRAATAG  180
DRQLQVACSN WTPESGAGAV KTEIEDADEL ALCVVIPAPP LPPSPQDDDP APARRRGPHQ  240
PQDHGAEPRR AVKTRSIHED LQASAALAAD ADIPASVRRY KGYVSRRRPV TGAERQLAME  300
LAYAFRSALP YCVIRMSTMH VYYSFMMRFP TGFSRQHLPR ERTDVVLRDP GGKAWVVLYI  360
PNTRDRLSRG WCAFARGNCL EEGDYCVFEL VGAAEFRVHV FRVVDPPVPA VRLRTAASDP  420
STADLDLTSA SHV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703065e-95HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814249.10.0B3 domain-containing protein Os01g0723500-like
SwissprotQ8S2E60.0Y1235_ORYSJ; B3 domain-containing protein Os01g0723500
TrEMBLA0A2S3HS550.0A0A2S3HS55_9POAL; Uncharacterized protein
STRINGPavir.Eb02930.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.13e-13related to vernalization1 1