PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01894.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 221aa    MW: 23475.2 Da    PI: 7.4973
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01894.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.92.8e-30136193259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dgy+WrKYG+K+vk+s++pr+YYrC+++gC+vkk+ver+++dp++v+++Yeg Hnh 
  Pahal.E01894.1 136 GDGYKWRKYGKKSVKNSPNPRNYYRCSTEGCNVKKRVERDRDDPSYVVTMYEGVHNHV 193
                     5********************************************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.1E-31122194IPR003657WRKY domain
SuperFamilySSF1182905.1E-27128194IPR003657WRKY domain
PROSITE profilePS5081130.136130195IPR003657WRKY domain
SMARTSM007746.4E-33135194IPR003657WRKY domain
PfamPF031065.0E-24137192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MHMALASCDS LPAADAACFF PAMAYHHPCD GGGLAASAFY GGASGPAAAL FTGLAPPRRQ  60
PDAAFECLSK EDVSSVVPGT FGTPPPRMPV EQAVPDASGY AHLARGTAAV AGAEGSSTRT  120
TDRIAFRVRS EEEVIGDGYK WRKYGKKSVK NSPNPRNYYR CSTEGCNVKK RVERDRDDPS  180
YVVTMYEGVH NHVSPGTIYY ATQDAASGRF FVAGMHQALD *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A5e-22123195274WRKY transcription factor 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586121e-105KU058612.1 UNVERIFIED: Panicum miliaceum WRKY24-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817958.11e-163probable WRKY transcription factor 57
TrEMBLA0A2S3HST61e-161A0A2S3HST6_9POAL; Uncharacterized protein
STRINGPavir.Eb02766.1.p1e-119(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.14e-38WRKY DNA-binding protein 50