PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01901.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family B3
Protein Properties Length: 294aa    MW: 32550 Da    PI: 8.2025
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01901.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.71.6e-1674170295
                     EEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEE.TTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   2 fkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltled.esgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     +k+l +sdv+++gr++lpkk ae++     +   + +k l ++d ++ + W++k++y  ++ks++yvl+ ++ ++ ka++L++gDf+v++ d+ +
  Pahal.E01901.1  74 QKELRNSDVSQLGRIILPKKEAESYlpillS---KDGKGLCMYDlLNAQLWTFKYRYwpNNKSRMYVLE-NTGDYIKAHELQQGDFIVIYKDD-E 163
                     7999***********************8642...24567999997888*********89999999**99.********************554.4 PP

                     EE..EEE CS
              B3  89 efelvvk 95 
                     + ++v++
  Pahal.E01901.1 164 NDRFVIG 170
                     4445665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100175.73E-2372169No hitNo description
Gene3DG3DSA:2.40.330.102.3E-2372178IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.19273175IPR003340B3 DNA binding domain
SMARTSM010191.5E-1273175IPR003340B3 DNA binding domain
SuperFamilySSF1019362.55E-1873169IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-1374170IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010116Biological Processpositive regulation of abscisic acid biosynthetic process
GO:0010262Biological Processsomatic embryogenesis
GO:0010373Biological Processnegative regulation of gibberellin biosynthetic process
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MAGISKRRTS PASTSSSSGD GMPRRITRKP RSARRGPRGA ARRPPAPRPV NALDLNTAAL  60
DPDHYATGLR VLLQKELRNS DVSQLGRIIL PKKEAESYLP ILLSKDGKGL CMYDLLNAQL  120
WTFKYRYWPN NKSRMYVLEN TGDYIKAHEL QQGDFIVIYK DDENDRFVIG AKKAGYEQTA  180
TVPQIIQEHM HISAATLPAP QVFHDYASPV APEADMLALV PQADEIFDGI LNSLPEIPVA  240
NVRYSDFFDP FGDSMDMANP LGSSHSVNLA THFHDEKAGC SSFPYYPKSG PLM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9b_A7e-41691841116B3 domain-containing transcription factor FUS3
6j9b_D7e-41691841116B3 domain-containing transcription factor FUS3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription repressor involved in flowering time regulation. Represses the flowering activator EHD1 by binding specifically to the DNA sequence 5'-CATGCATG-3 of its promoter. {ECO:0000269|PubMed:17592727, ECO:0000269|PubMed:17913295}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00382DAPTransfer from AT3G26790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819250.10.0B3 domain-containing protein LFL1-like
SwissprotA4LBC01e-114LFL1_ORYSJ; B3 domain-containing protein LFL1
TrEMBLA0A2S3HSK10.0A0A2S3HSK1_9POAL; Uncharacterized protein
STRINGSi004459m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80912736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26790.11e-41B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yang J, et al.
    OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
    Plant J., 2013. 73(4): p. 566-78
    [PMID:23083333]
  3. Guo X, et al.
    The rice GERMINATION DEFECTIVE 1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
    Plant J., 2013. 75(3): p. 403-16
    [PMID:23581288]
  4. Matsuno K,Fujimura T
    Do rice suspension-cultured cells treated with abscisic acid mimic developing seeds?
    Mol. Genet. Genomics, 2015. 290(4): p. 1551-62
    [PMID:25732383]