PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E01940.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 260aa    MW: 28081.8 Da    PI: 8.2057
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E01940.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.7e-11556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT eE++ l ++v ++G g W+tI +          R+  ++k++w+++
   Pahal.E01940.2  5 KQKWTSEEEDALRRGVLKHGAGKWRTIQKDPEfspvlSSRSNIDLKDKWRNL 56
                     79***********************************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.672160IPR017930Myb domain
SuperFamilySSF466891.79E-15258IPR009057Homeodomain-like
SMARTSM007172.8E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.8E-14556IPR009057Homeodomain-like
PfamPF002493.7E-8556IPR001005SANT/Myb domain
CDDcd116602.75E-20656No hitNo description
Gene3DG3DSA:1.10.10.103.9E-5110159IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.07E-5112158IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MGAPKQKWTS EEEDALRRGV LKHGAGKWRT IQKDPEFSPV LSSRSNIDLK DKWRNLSFSA  60
SGMGSRDKTR VPKITGPSSS PSSTSQALVV SVANKVAEAP PDAEKKPQDV KTQPKYGAMI  120
LEALSELNEP NGTEMTEICS FIEVDTKSYR LTDSFATRAP APIKASAPKQ KDPSKPSKVS  180
KNLGLFATSS PALEAAIAAA AKVADAEVKA HDAHDQMMEA ERILKMAEET ESLLTIAAEI  240
YDRCSRGEIT TLNPAQREL*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF5691741e-120HF569174.1 Saccharum officinarum mRNA for MYB-related protein (myb68 gene), cultivar Co86032.
GenBankHF6794261e-120HF679426.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB20 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815372.11e-156glycylpeptide N-tetradecanoyltransferase 1
SwissprotQ6WLH41e-123SMH3_MAIZE; Single myb histone 3
TrEMBLA0A2S3HSG50.0A0A2S3HSG5_9POAL; Uncharacterized protein
TrEMBLA0A2T7DHT00.0A0A2T7DHT0_9POAL; Uncharacterized protein
STRINGPavir.Eb02802.1.p1e-158(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.33e-36telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]
  2. Schnable PS, et al.
    The B73 maize genome: complexity, diversity, and dynamics.
    Science, 2009. 326(5956): p. 1112-5
    [PMID:19965430]