PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02128.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family E2F/DP
Protein Properties Length: 255aa    MW: 28724.1 Da    PI: 10.0458
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02128.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP68.58.1e-2263138371
         E2F_TDP   3 eksLrlltqkflklleksee.givtlnevakeLvse..........dvknkrRRiYDilNVLealnliekkekneirwkg 71 
                     +++Lr +++    + +k+e+ g++t+neva+e+ +e          d+kn+rRR+YD++NVL al++i+k +k+ei+w+g
  Pahal.E02128.1  63 GWGLREYSKI---VSKKVETkGRTTYNEVADEICAElkltlngqefDEKNIRRRVYDAFNVLIALRVIAK-DKKEIKWMG 138
                     6899****99...99999999*************************************************.*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0094043.6E-8532253IPR015648Transcription factor DP
Gene3DG3DSA:1.10.10.108.3E-3459142IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-2161138IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467853.26E-1664139IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF023193.6E-1865138IPR003316E2F/DP family, winged-helix DNA-binding domain
CDDcd144583.87E-24143242IPR014889Transcription factor DP, C-terminal
SMARTSM011384.4E-26145248IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440741.12E-27145247No hitNo description
PfamPF087812.2E-21146243IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007049Biological Processcell cycle
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAPPCGDAAA APELTSLRIP DGAELPPLPR RGGGGGNAAE REEEGDKSKK ARKEKAGAQR  60
IAGWGLREYS KIVSKKVETK GRTTYNEVAD EICAELKLTL NGQEFDEKNI RRRVYDAFNV  120
LIALRVIAKD KKEIKWMGLS NFRYEKIKKL EEAHKELMIR IKNKKKLLQE IEKQFDDLQN  180
IKFRNQVLQR PAESVNGICL PFLLVKASRK ARVEIEISED SKFAGFDFNC TPFTLHDDVS  240
ILDGIRRNGI RRAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B6e-2363139989PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819130.10.0transcription factor-like protein DPB
TrEMBLA0A2S3HTF50.0A0A2S3HTF5_9POAL; Uncharacterized protein
TrEMBLA0A2T7DIF50.0A0A2T7DIF5_9POAL; Uncharacterized protein
STRINGPavir.Ea02346.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128338109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.14e-57Transcription factor DP