PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E02156.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

Trihelix

Protein Properties

Length: 323aa MW: 35078.5 Da PI: 10.301

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E02156.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	40.4	7.5e-13	18	103	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +W++ e+ aL++a ++ +l+rg+l++p+W+ev++++ ++r r+ +qCk++ + l+k+yk+++++ + s ++++ ql Pahal.E02156.1 18 CWSEGETAALVDAWGSRYLDLNRGSLRQPQWREVADAVnsrpgasARRRPPRTDIQCKNRVDTLKKKYKAERARGGP------SPWAFYGQL 103 7*****************************************999999******************9998775......346666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	7.3E-24	16	104	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MDGKLPPPNP NLPYREDCWS EGETAALVDA WGSRYLDLNR GSLRQPQWRE VADAVNSRPG 60 ASARRRPPRT DIQCKNRVDT LKKKYKAERA RGGPSPWAFY GQLDLLVGPT LAGGGNGAKK 120 PSPPRAAMPI FRRRKSPSRS PSPQSPPPLP MALPLPNYRR GSDLPSANLI HKAAAAAAAA 180 ATESDSEDGY NNNNDYDDDD GSQQSPSRSV SSRSGGAAAA APAVGSKRKM SSGSGGFGEL 240 ARAIETFAEM YERMEAAKQR HAEEMERQRI KFLKDLELKR MQTFVDMQLQ LARAKHARKG 300 DASSEMLMSL AALPFLSSPA YL*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ727855	0.0	KJ727855.1 Zea mays clone pUT5900 trihelix transcription factor (THX17) gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817606.1	0.0	trihelix transcription factor ASIL2-like isoform X1
Swissprot	Q9LJG8	8e-32	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A2S3HT44	0.0	A0A2S3HT44_9POAL; Uncharacterized protein
STRING	Sb03g030880.1	1e-171	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2065	32	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	1e-29	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Pahal.E02156.1