PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02216.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 398aa    MW: 40867.5 Da    PI: 7.3896
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02216.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33208265259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++Cpvkk+vers +dp vv++tYeg+H+h+
  Pahal.E02216.1 208 EDGYRWRKYGQKAVKNSPYPRSYYRCTTQKCPVKKRVERSYQDPAVVITTYEGKHTHP 265
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-35192267IPR003657WRKY domain
SuperFamilySSF1182901.15E-29199267IPR003657WRKY domain
PROSITE profilePS5081132.535202267IPR003657WRKY domain
SMARTSM007742.6E-39207266IPR003657WRKY domain
PfamPF031062.0E-26208265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MSSGEFHFHD ELASLFAQRP AAGPGQGEMM AQQQHQAPAS CFADYLHAGA PGVGMDYDLL  60
WRALDLPVPG DDVVKRELLV VDTGGGGGGF AAPAPTPSGG GTAPVTPNTT SSMSSSSSEA  120
AGGSGGGGGG GGGGGGGGGG FGAGEGDSLK KEEGEGEESK ELGGKGEDDA DKSKKGAAAA  180
GKAKGKGEKR QRQPRFAFMT KSEVDHLEDG YRWRKYGQKA VKNSPYPRSY YRCTTQKCPV  240
KKRVERSYQD PAVVITTYEG KHTHPIPATL RGSTHLLAAQ LHHHHHAGGH HLGDAFPPPP  300
LPQMGAPFGR PGVGGGVIDV LGLLPPRGGP HNNHNVPPAT GLASSHGMSG PMSTVAGATT  360
TTSSSAPSLQ MQHFMAQDFG LLQDMLPPPF VHSNIQP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27198268878Probable WRKY transcription factor 4
2lex_A1e-27198268878Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0681160.0BT068116.1 Zea mays full-length cDNA clone ZM_BFb0045M20 mRNA, complete cds.
GenBankKJ7275430.0KJ727543.1 Zea mays clone pUT5403 WRKY transcription factor (WRKY95) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819436.10.0probable WRKY transcription factor 48
TrEMBLA0A2S3HT710.0A0A2S3HT71_9POAL; Uncharacterized protein
STRINGSi001816m1e-168(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29860.14e-49WRKY DNA-binding protein 71