PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02236.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 89aa    MW: 9952.92 Da    PI: 7.6779
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02236.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding292.4e-091761344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++ E +l+ +a + +G +   +W++++r +g  +t+ +++ ++
   Pahal.E02236.1 17 TWSKKENKLFEEALAYYGEDtpdRWHKVSRAIGGSKTADEVRRHY 61
                     7********************************99*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.0911369IPR017884SANT domain
SMARTSM007171.2E-61467IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-121467IPR009057Homeodomain-like
PfamPF002491.0E-71761IPR001005SANT/Myb domain
CDDcd001671.54E-51764No hitNo description
Gene3DG3DSA:1.10.10.601.4E-41762IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 89 aa     Download sequence    Send to blast
MSGSRSSSSR SANVDSTWSK KENKLFEEAL AYYGEDTPDR WHKVSRAIGG SKTADEVRRH  60
YELLDDDVKL ILSGNVPFPK YNTQGAWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-2418861178RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818573.18e-60protein RADIALIS-like 3
SwissprotQ6NNN03e-25RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A2S3HT792e-58A0A2S3HT79_9POAL; Uncharacterized protein
TrEMBLA0A2T7DIT32e-58A0A2T7DIT3_9POAL; Uncharacterized protein
STRINGPavir.Ea02339.1.p3e-49(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.12e-25RAD-like 1