PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02266.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 314aa    MW: 32948.2 Da    PI: 4.4043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02266.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.68.8e-2094144155
             AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr+++ +g+++AeIrd +     r  r++lg+f+taeeAa+ ++ a+ +l+g
  Pahal.E02266.1  94 TKFRGVRRRP-WGKFAAEIRDpW-----RgVRVWLGTFDTAEEAARVYDTAAIQLRG 144
                     69********.**********88.....55*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.20E-2894154No hitNo description
PfamPF008473.5E-1294144IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-2995152IPR001471AP2/ERF domain
PROSITE profilePS5103223.34195152IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-2195152IPR016177DNA-binding domain
SMARTSM003803.8E-3495158IPR001471AP2/ERF domain
PRINTSPR003672.6E-1096107IPR001471AP2/ERF domain
PRINTSPR003672.6E-10118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSRSRTVRIF WDDPDLTDSS GEEEGCGARR VGRMVRELPP MAVAAAPAAP TPEQCSAGDG  60
DRGRRLGGGG GVPGACSGGA RRRLAKGGPG ATSTKFRGVR RRPWGKFAAE IRDPWRGVRV  120
WLGTFDTAEE AARVYDTAAI QLRGPNATTN FAAAQSGTGA AQDADPDPAT PGYESGAESS  180
PAASSPTSVL RKVPSLSSLA EDYSKDDSDA APCEPAAAER FSLAVLEEEA LGEFVPFEDA  240
PVYATSGFWD IRPDAGFLYA EPSSPEASWN TAAYPASSGE APSWAASSPA TQENDYFEDL  300
RDLFPLHPLP AIF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-2188151771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817458.10.0pathogenesis-related genes transcriptional activator PTI6-like
TrEMBLA0A2S3HTB30.0A0A2S3HTB3_9POAL; Uncharacterized protein
STRINGPavir.Eb01758.1.p1e-160(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.11e-26cytokinin response factor 1