PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02272.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 325aa    MW: 34000.6 Da    PI: 6.7855
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02272.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY81.77.6e-26127188159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg +WrKYGqK++ g+++pr+Y+rCt++   +C++ k+v+r++ dp +++++Y+g+H++ 
  Pahal.E02272.1 127 LDDGLSWRKYGQKDILGAKYPRAYFRCTHRhsqSCNASKQVQRTDGDPLLFDVVYHGSHTCA 188
                     58***************************98899**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-27114189IPR003657WRKY domain
SuperFamilySSF1182901.7E-24121189IPR003657WRKY domain
PROSITE profilePS5081120.587122185IPR003657WRKY domain
SMARTSM007741.4E-37127189IPR003657WRKY domain
PfamPF031062.0E-24128187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MEAGMSEEKN ALVAELVRVL EMVRQLEAHM AGQQQQQAGG EQRCRALVGT MRDSIHRAVH  60
MAMSSCAGGQ PESPPSGGDG SPRSAGSDQA GDFRGRGNAA GQCKRRKTLP KWSTQVRVSA  120
VQDVTPLDDG LSWRKYGQKD ILGAKYPRAY FRCTHRHSQS CNASKQVQRT DGDPLLFDVV  180
YHGSHTCAQA QQHGAAAHPG GSNQGARPAA ASGPGEHSQS QAQTTASPGF EAAAGPALPF  240
SLPSNGPAAG ADDAGGSRLP GGGARATASP FVSPATPECL ARDVPHPHDA ELASTTNSPM  300
PMEEMDFMFP LDAADFLENP ASYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-21124187568OsWRKY45
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7284191e-167KJ728419.1 Zea mays clone pUT6724 WRKY transcription factor (WRKY74) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817578.10.0probable WRKY transcription factor 41
TrEMBLA0A2S3HTS20.0A0A2S3HTS2_9POAL; Uncharacterized protein
STRINGSi002203m1e-171(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33553183
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.21e-35WRKY family protein