PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02346.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB
Protein Properties Length: 257aa    MW: 27409.1 Da    PI: 8.207
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02346.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.45.1e-161663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd+ lv ++ q+G g+W+  ar  g++R +k+c++rw++yl
   Pahal.E02346.1 16 KGPWTLEEDLVLVGYISQHGEGSWDNLARAAGLNRNGKSCRLRWLNYL 63
                     79********************************************97 PP
2Myb_DNA-binding48.61.9e-1569112146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+ Ed  + ++++ lG++ W++Ia++++ gRt++++k++w++
   Pahal.E02346.1  69 RGSITPAEDAAIRELHASLGNK-WSKIAEHLP-GRTDNEIKNYWRT 112
                      7889******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.8821163IPR017930Myb domain
SuperFamilySSF466895.31E-3014110IPR009057Homeodomain-like
SMARTSM007175.9E-121565IPR001005SANT/Myb domain
PfamPF002491.3E-131663IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-191769IPR009057Homeodomain-like
CDDcd001673.85E-91863No hitNo description
PROSITE profilePS5129424.02664118IPR017930Myb domain
SMARTSM007172.2E-1468116IPR001005SANT/Myb domain
PfamPF002493.6E-1469112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-2470116IPR009057Homeodomain-like
CDDcd001672.38E-1173112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRTCGRAGG EPAVRKGPWT LEEDLVLVGY ISQHGEGSWD NLARAAGLNR NGKSCRLRWL  60
NYLRPGVRRG SITPAEDAAI RELHASLGNK WSKIAEHLPG RTDNEIKNYW RTRIQRRPAA  120
SAQQQQAYRA PATAAAIAAS EGASSSSSAS ASHGSSAAGD WWYVEPNHPE QGADRSQKSV  180
AAAAAGVDSG SASSALTRRD SSATAGDGYM KTSYSDRYYS ELSSVAADGV KMVDAESFWN  240
VVDDFWGTLP VPDATF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-26101171107B-MYB
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7281931e-123KJ728193.1 Zea mays clone pUT6467 MYB transcription factor (MYB53) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815399.10.0myb-related protein 340-like
TrEMBLA0A2S3HTL30.0A0A2S3HTL3_9POAL; Uncharacterized protein
STRINGPavir.Eb01664.1.p1e-123(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132402633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.11e-55myb domain protein 21