PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02354.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 86aa    MW: 9654.9 Da    PI: 9.025
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02354.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-101155244
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                       WT+  d+l+ +a + + ++   +W+ Iar +g g+++++++ ++
   Pahal.E02354.1 11 AQWTKKQDKLFEQALAVYDKDtpdRWHNIARAVG-GKSAEEVRRYY 55
                     57********************************.*********99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129311.151863IPR017884SANT domain
SMARTSM007178.5E-10961IPR001005SANT/Myb domain
PfamPF002491.5E-81155IPR001005SANT/Myb domain
SuperFamilySSF466891.95E-131266IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-71265IPR009057Homeodomain-like
CDDcd001676.28E-91358No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 86 aa     Download sequence    Send to blast
MASMSMSSSR AQWTKKQDKL FEQALAVYDK DTPDRWHNIA RAVGGKSAEE VRRYYELLEE  60
DVKRIEAGKV PFPAYRCPGG GAPNY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-30681179RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0078586e-63AC007858.1 Oryza sativa (japonica cultivar-group) chromosome 5 clone BAC 10A19I, complete sequence.
GenBankAC1209886e-63AC120988.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0017N18, complete sequence.
GenBankAK2415286e-63AK241528.1 Oryza sativa Japonica Group cDNA, clone: J065171E20, full insert sequence.
GenBankAP0149616e-63AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
GenBankCP0126136e-63CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
GenBankCT8363546e-63CT836354.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA043L05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814678.12e-58protein RADIALIS-like 3
RefseqXP_025814679.12e-58protein RADIALIS-like 3
SwissprotQ6NNN09e-32RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A2S3HTT34e-57A0A2S3HTT3_9POAL; Uncharacterized protein
TrEMBLA0A3L6QYX24e-57A0A3L6QYX2_PANMI; Protein RADIALIS-like 3
STRINGSi023770m4e-49(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.18e-24RAD-like 1