PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02399.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 363aa    MW: 38620.8 Da    PI: 6.992
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02399.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.13.1e-32212269259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vk+s++prsYYrCt+++C vkk+vers +dp++v++tYeg+H+h+
  Pahal.E02399.1 212 EDGYRWRKYGQKAVKNSPYPRSYYRCTTPKCGVKKRVERSYQDPSTVITTYEGQHTHH 269
                     8********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-34196271IPR003657WRKY domain
SuperFamilySSF1182907.45E-29204271IPR003657WRKY domain
PROSITE profilePS5081131.066206271IPR003657WRKY domain
SMARTSM007741.6E-37211270IPR003657WRKY domain
PfamPF031062.1E-25212269IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0009733Biological Processresponse to auxin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MSSGGGGGGG IGGGGGGDHH GVYHQHGHDH LARADGAEFA FNNNDMESFF FSQPASGVVG  60
SSRTGADELM PPYSSITDYL QGFLDPTGLA RHLDAPCPPA EDAPVVKHEL SLDVMSHDSQ  120
GTSGGAAGEG GGALLTPNSS VSLSSSDREG DGQPRRCKKK AGGEVAAEGD EKDQDDGENS  180
TKASKPNKKK AEKRQRQPRV AFLTKSEVDH LEDGYRWRKY GQKAVKNSPY PRSYYRCTTP  240
KCGVKKRVER SYQDPSTVIT TYEGQHTHHS PASLRAGGAH LFMAGAHLVP PGAGFRPDHL  300
MGMMHHHPAT IPTGAISPSM FLPSMPPPPQ MPAPSPPLQQ HHFTDYDLLQ DLFPSSTMPN  360
NP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-292042721078Probable WRKY transcription factor 4
2lex_A4e-292042721078Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00440DAPTransfer from AT4G18170Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815007.10.0WRKY transcription factor 71-like
TrEMBLA0A2S3HTQ90.0A0A2S3HTQ9_9POAL; Uncharacterized protein
STRINGPavir.Ea02224.1.p1e-177(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62337173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.18e-46WRKY DNA-binding protein 28