PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02775.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 378aa    MW: 40401.9 Da    PI: 6.1151
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02775.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.64e-31175233259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+vers++dp++++ tY+geHnh 
  Pahal.E02775.1 175 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCAARKQVERSRSDPNIFILTYTGEHNHA 233
                     79*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR012177.4E-94157No hitNo description
PRINTSPR012177.4E-994115No hitNo description
PRINTSPR012177.4E-9121137No hitNo description
Gene3DG3DSA:2.20.25.801.9E-30164235IPR003657WRKY domain
PROSITE profilePS5081133.327169235IPR003657WRKY domain
SuperFamilySSF1182906.15E-26173235IPR003657WRKY domain
SMARTSM007744.4E-37174234IPR003657WRKY domain
PfamPF031067.8E-26176232IPR003657WRKY domain
PRINTSPR012177.4E-9239264No hitNo description
PRINTSPR012177.4E-9272284No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MEEERCFNNW DLDAVVRLGC RRRLSPPRQG DTNPFAALLP PQPRKEKEKA AVQAPEPAKE  60
PEADTGWRFP DLCADGGQGG DELLRALLAA HPPPLPQPLP APPSPPTPTP TPPPPQRQLQ  120
PVDVPPPQVH AAPASAPARA QPSGRPVPGG APRSKRRKNQ VKKVVCHVPA DSSSSDVWAW  180
RKYGQKPIKG SPYPRGYYRC SSSKGCAARK QVERSRSDPN IFILTYTGEH NHAAPTHRNS  240
LAGTTRHKFP SSTAPQPPPP SVVVCGASSS GDEQHQPQQP SPSRTSTSAA GLSPTTPLRT  300
PSIEEDDDEE DGLRVEDIEM AGEDELLFMN TDDDDAAPLE SMPSLFDTVD EPFLSSSWVS  360
ASTTAGEPPT GAAGAKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-21159236380Disease resistance protein RRS1
5w3x_D4e-21159236380Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586180.0KU058618.1 UNVERIFIED: Panicum miliaceum WRKY13-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814242.10.0probable WRKY transcription factor 27
TrEMBLA0A2S3HV520.0A0A2S3HV52_9POAL; Uncharacterized protein
STRINGPavir.Ea01906.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP53583361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.16e-51WRKY family protein