PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E02800.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bZIP

Protein Properties

Length: 137aa MW: 15037 Da PI: 7.9172

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E02800.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	41.2	3.6e-13	36	94	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 ++ +rk++NR++A+rsR+RK+++++ L++ v +L a N a++ + + +a++++e+ Pahal.E02800.1 36 RKRKRKESNRLSAQRSRARKQQQLDDLTNQVTALRARNGAMAAAAYDVERRCAAVQAEN 94 6789************************************************9998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.4E-10	32	96	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.8E-8	34	76	No hit	No description
PROSITE profile	PS50217	9.806	34	97	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.22E-8	36	78	No hit	No description
Pfam	PF00170	3.5E-9	36	90	IPR004827	Basic-leucine zipper domain
CDD	cd14702	2.55E-12	37	88	No hit	No description
PROSITE pattern	PS00036	0	39	54	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MASPSMVSAV TTSPSTGSEP EAPCCDPQLA AVTAERKRKR KESNRLSAQR SRARKQQQLD 60 DLTNQVTALR ARNGAMAAAA YDVERRCAAV QAENALLQAM NLELGERLQS LTELIQCMEA 120 AMYHQPQLLD ANMYYY*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	35	40	RKRKRK
2	35	41	RKRKRKE

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818325.1	1e-94	bZIP transcription factor 44-like
TrEMBL	A0A2S3HV76	3e-93	A0A2S3HV76_9POAL; Uncharacterized protein
STRING	Pavir.Eb01429.1.p	3e-79	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13757	24	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75390.1	4e-11	basic leucine-zipper 44

Link Out ? help Back to Top
Phytozome	Pahal.E02800.1