PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E02921.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 223aa    MW: 24417.8 Da    PI: 10.0481
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E02921.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY106.41.5e-33131189159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg+H+h+
  Pahal.E02921.1 131 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLSRDEAVVVTTYEGTHTHP 189
                     59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-34116189IPR003657WRKY domain
SuperFamilySSF1182907.59E-30123190IPR003657WRKY domain
PROSITE profilePS5081130.308126191IPR003657WRKY domain
SMARTSM007744.5E-40131190IPR003657WRKY domain
PfamPF031061.5E-27132189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0010055Biological Processatrichoblast differentiation
GO:0032107Biological Processregulation of response to nutrient levels
GO:0043620Biological Processregulation of DNA-templated transcription in response to stress
GO:0048527Biological Processlateral root development
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 223 aa     Download sequence    Send to blast
MENYHMLFGA TQPSSSTSNS YNFLAAGAGG GTSSLQLRDH HDRGQQQAGH SHRHSHSHSG  60
PLFLAAELSN SSKQDGGVSP PAAAAGRGES SPGPAAAEAD RPAGVAGKRK GEKKERRPRY  120
AFQTRSQVDI LDDGYRWRKY GQKAVKNNKF PRSYYRCTHQ GCNVKKQVQR LSRDEAVVVT  180
TYEGTHTHPI EKSNDNFEHI LTQMQIYSGM GSNFSSSHSM FH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-27122190876Probable WRKY transcription factor 4
2lex_A1e-27122190876Probable WRKY transcription factor 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00506DAPTransfer from AT5G13080Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7282001e-119KJ728200.1 Zea mays clone pUT6475 WRKY transcription factor (WRKY108) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826644.11e-166probable WRKY transcription factor 12 isoform X1
RefseqXP_025826645.11e-167probable WRKY transcription factor 75 isoform X2
TrEMBLA0A2S3IEZ61e-165A0A2S3IEZ6_9POAL; Uncharacterized protein
STRINGSi026859m1e-121(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP110038133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13080.15e-57WRKY DNA-binding protein 75