PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03076.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C2H2

Protein Properties

Length: 237aa MW: 26074.1 Da PI: 6.0189

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03076.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17	1.7e-05	207	229	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ F+++ ++ +H+++H Pahal.E03076.1 207 YTCKLCDAIFTTPQTYYSHMSLH 229 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.746	207	234	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	209	229	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MDPSNYPTKD ISFGQSDDNI SPLHQRYYSN SEAPPPQPHP GFAHAPPAST IASAEPVQSP 60 VENEQELMRS FLTIPVGKFL SVDERVRVSS MEPPSITSLL QGNKTAILHA HLDIAGALDP 120 DPIFQDPASN IPKEKEMRKL LGSSSSHGNS YGKMPYVKPT YFDQSPMSSH VQREQQVPSV 180 VMQSSNSDDA IRAAINSTFE FTEVQRYTCK LCDAIFTTPQ TYYSHMSLHN KGMSSN*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457384.2	3e-65	uncharacterized protein LOC8060818
TrEMBL	A0A2S3HVW3	1e-174	A0A2S3HVW3_9POAL; Uncharacterized protein
STRING	Pavir.Ea00985.1.p	1e-129	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP19398	6	9

Link Out ? help Back to Top
Phytozome	Pahal.E03076.1