PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03240.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 572aa    MW: 59146.8 Da    PI: 7.321
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.53.6e-30283341259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dg++WrKYGqK+ kg+++pr+YYrCt+a  Cpv+k+v+r+aed++++++tYeg+Hnh+
  Pahal.E03240.1 283 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvACPVRKQVQRCAEDKSILVTTYEGHHNHP 341
                     7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-32267343IPR003657WRKY domain
SuperFamilySSF1182902.48E-27275343IPR003657WRKY domain
PROSITE profilePS5081128.759277343IPR003657WRKY domain
SMARTSM007745.9E-36282342IPR003657WRKY domain
PfamPF031069.0E-26284341IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
METKPERHRH DSVHEEGGED DATMAHGALS LHHRGAAALF GPRHDEEAAG RRGEIREVDF  60
FSRDSGARRQ QDDGGGRRVP PGGGRDDVNI GLDLLTTGTA AAASAGEEVT AAKNHKMEAS  120
AVETELRRVV DENRQLRGIL EELTRNYGTL YQQLLQVTQH HPHQHQHPDL MNNRSSLLPH  180
THLNTMGAPN SSATRQLLEA RASSTAQTRP DAGAEDEASD GAGEASPSLS NNGGINNSDG  240
KRKMSQDGTA PPRENGEQAS SAELPGRKAR VSVRARSEAP MISDGCQWRK YGQKMAKGNP  300
CPRAYYRCTM AVACPVRKQV QRCAEDKSIL VTTYEGHHNH PLPPAATTMA NTTSAAAAML  360
LSGPATSRDG AAALLSHHPA ALFHHHASIP YASTMATLSA SAPFPTITLD LTQAPGGGAP  420
GSGGLLAHGL QRPPVGMVHP AAAGPAMPFA VPSPLAMFLP QRAPAAAAAM PAGLVARQPQ  480
QSVMETVTAA IAADPNFTTA LAAAISSVMA GGGAQQAQLA TPRGSNIGIA EEASGGAGAT  540
APAAPTTTAA GAHAASGSPR FATQSCTTST T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A8e-21269345176WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025814260.10.0probable WRKY transcription factor 31
TrEMBLA0A2S3HW160.0A0A2S3HW16_9POAL; Uncharacterized protein
STRINGSi000824m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP43583260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.13e-64WRKY family protein