PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03447.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

FAR1

Protein Properties

Length: 227aa MW: 24133.2 Da PI: 8.573

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03447.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.5e-25	127	220	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 +fY++YA+++GFs+r+ +++k+ n+ei+ + +Cs+eg+r+e+k+k ++++ + etr+gC+a++ vk+ +d+k+++t+++++HnH l Pahal.E03447.1 127 NFYKDYARDAGFSIRIGQQRKE--NEEIIAKYVYCSREGYRKERKTKivdqagKKRKPPSVLETRCGCEAHIYVKLGTDKKYRITSMVEHHNHGL 219 6***************9998..999***************99998655556668889****************************99 PP FAR1 90 a 90 + Pahal.E03447.1 220 V 220 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.1E-23	127	220	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 227 aa Download sequence Send to blast
MASASSFPAA SPTADGLAPS LGTVSPSPAA SFSIRGGASA SVRAIVCSAS CTPRPAAGSA 60 STPCAMDDAS HMPVAAIDDA SDVPVAAMDG TSDRLTVTNG LSYVRDVDSS SKPVIGMTFD 120 SIEDVQNFYK DYARDAGFSI RIGQQRKENE EIIAKYVYCS REGYRKERKT KIVDQAGKKR 180 KPPSVLETRC GCEAHIYVKL GTDKKYRITS MVEHHNHGLV SPNKRH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025814502.1	1e-118	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2T8KVS5	1e-110	A0A2T8KVS5_9POAL; Uncharacterized protein
STRING	Sb01g028975.1	3e-47	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15006	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	8e-14	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Pahal.E03447.1