PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03487.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 478aa    MW: 50002.6 Da    PI: 7.0947
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03487.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.5e-116591127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++++ C +++rtG C +GdrC+++H++
  Pahal.E03487.1 65 PGEADCGYYLRTGACGFGDRCRYNHPR 91
                    57899********************96 PP
2zf-CCCH37.24.9e-12115140227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +++ C ++++tGtCk+G++Ck++H++
  Pahal.E03487.1 115 GQPVCEYYLKTGTCKFGSNCKYHHPK 140
                     7899********************96 PP
3zf-CCCH40.25.6e-13161185327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+++++tG+Ck+G++CkF+H++
  Pahal.E03487.1 161 EKECSYYMKTGQCKFGSTCKFHHPE 185
                     689********************96 PP
4zf-CCCH39.21.2e-12313339127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G++Ck++H++
  Pahal.E03487.1 313 PGQPECQYYMRTGDCKFGATCKYNHPR 339
                     5789*********************96 PP
5zf-CCCH30.84.9e-10362385427
                     ---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                      +C ++a++G+C+yG  Ck+ H++
  Pahal.E03487.1 362 QPCAYYAQNGYCRYGIACKYDHPM 385
                     69********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.926492IPR000571Zinc finger, CCCH-type
SMARTSM003565.9E-66491IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-96691IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.14E-56892IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-47091IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.483113141IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-7113140IPR000571Zinc finger, CCCH-type
PfamPF006428.8E-10115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.81E-7116142IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-6118142IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.183158186IPR000571Zinc finger, CCCH-type
SMARTSM003564.5E-6158185IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.71E-6160185IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-10161185IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4164184IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263312340IPR000571Zinc finger, CCCH-type
SMARTSM003564.4E-6312339IPR000571Zinc finger, CCCH-type
PfamPF006425.7E-10314339IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-5316340IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4318339IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873358386IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6358385IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.31E-5359387IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7362385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4362383IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEPPHAEEAA AAGGGGGGGG GGEGGRASPG TGLEGPMLRL GLDGGGEGED GEREAEADAR  60
LPERPGEADC GYYLRTGACG FGDRCRYNHP RDRGGTEFGG GAKNGAASDF PERQGQPVCE  120
YYLKTGTCKF GSNCKYHHPK QDGSVQSVIL NSSGFPLRLG EKECSYYMKT GQCKFGSTCK  180
FHHPEFGGIP VTPGIYPPLQ SASVTSPHTY APLANWQMGR SPVVPGSYIP GSYTPMMLSS  240
GMVPLQGWNP YPASVNPVAS VGAQQTVQAG PLYGIGHHGS SATIAYGSPY MPYSSSTGQS  300
SNNHQEHGFP ERPGQPECQY YMRTGDCKFG ATCKYNHPRD WSAAKSSYVF SPLCLPLRPG  360
AQPCAYYAQN GYCRYGIACK YDHPMGALGY SSSALPLSDM PIAPYPLGFS VATLAPSSSS  420
PEYISTKDQS INQVASPVAA PESVGAVLPK GVFPPDTIMR TQTSTTGVSS SSPGGGR*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9688300.0EU968830.1 Zea mays clone 324384 zinc finger CCCH type domain-containing protein ZFN-like 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815660.10.0uncharacterized protein LOC112892755
SwissprotQ5NAW20.0C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6
TrEMBLA0A2S3HWN40.0A0A2S3HWN4_9POAL; Uncharacterized protein
STRINGPavir.Ea00916.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27613889
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-122C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Friedrichs G,Fikri M,Guo Y,Temps F
    Time-resolved cavity ringdown measurements and kinetic modeling of the pressure dependences of the recombination reactions of SiH2 with the alkenes C2H4, C3H6, and t-C4H8.
    J Phys Chem A, 2008. 112(25): p. 5636-46
    [PMID:18512897]
  3. Ning H,Gong C,Li Z,Li X
    Pressure-dependent kinetics of initial reactions in iso-octane pyrolysis.
    J Phys Chem A, 2015. 119(18): p. 4093-107
    [PMID:25868004]