PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03543.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 220aa    MW: 24118.3 Da    PI: 8.6746
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03543.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.36.4e-09119140627
                     -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                     C++f rtGtCkyGd+C++ H++
  Pahal.E03543.1 119 CHHFVRTGTCKYGDSCRYFHPK 140
                     ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.4E-6338IPR003604Zinc finger, U1-type
SuperFamilySSF576671.01E-15448No hitNo description
PfamPF062207.8E-11537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.896113141IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-4115140IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-7117143IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-7118140IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-7118140IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGTQ HQRARALWYD SVRHQGQLPI PPLLLPSSRS  60
SLPLLWLASF VEHLVCHGHR GCFEFRVLLT RLLFPSSADQ HGGASSLLLP DGTLAKGVCH  120
HFVRTGTCKY GDSCRYFHPK PDVANPSLAA PGPGPGTMVQ QSNFLGSQPN FVGYQAAERN  180
SFSGNVSGAH TSWSWGNLPP SLQPPPEVGY PPLPFVDWG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9445355e-78EU944535.1 Zea mays clone 221714 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815211.11e-111zinc finger CCCH domain-containing protein 3
SwissprotQ0JP118e-51C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A3L6R1U91e-151A0A3L6R1U9_PANMI; Shaggy-related protein kinase iota-like isoform X3
STRINGPavir.Eb00973.1.p1e-101(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126172326
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.14e-22C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]