PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03543.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 167aa    MW: 18226.3 Da    PI: 8.4781
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03543.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.4e-096687627
                    -SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  6 CrffartGtCkyGdrCkFaHgp 27
                    C++f rtGtCkyGd+C++ H++
  Pahal.E03543.2 66 CHHFVRTGTCKYGDSCRYFHPK 87
                    ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004512.4E-6338IPR003604Zinc finger, U1-type
SuperFamilySSF576675.66E-16448No hitNo description
PfamPF062205.0E-11537IPR013085Zinc finger, U1-C type
PROSITE profilePS5010314.8966088IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-46287IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-76490IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-76587IPR000571Zinc finger, CCCH-type
PfamPF006425.6E-76587IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MPLGKYYCDY CDKQFQDTPA ARKRHLQGTQ HQRARALWYD SVRHQDQHGG ASSLLLPDGT  60
LAKGVCHHFV RTGTCKYGDS CRYFHPKPDV ANPSLAAPGP GPGTMVQQSN FLGSQPNFVG  120
YQAAERNSFS GNVSGAHTSW SWGNLPPSLQ PPPEVGYPPL PFVDWG*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9445351e-130EU944535.1 Zea mays clone 221714 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815211.11e-122zinc finger CCCH domain-containing protein 3
SwissprotQ0JP115e-76C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBLA0A2S3HWR61e-120A0A2S3HWR6_9POAL; Uncharacterized protein
TrEMBLA0A2T7DPK11e-120A0A2T7DPK1_9POAL; Uncharacterized protein
STRINGPavir.Eb00973.1.p1e-112(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26749.12e-41C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]