PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03649.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 238aa    MW: 25554.6 Da    PI: 9.8227
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03649.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.82.2e-093684654
                    HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                    +e+Er+RR++++s   +L +l+P+ +  ++  ++  + L +A  YIk+L
  Pahal.E03649.1 36 KEIERKRRQHMKSLCVKLASLIPEEYYSSKDTMTQQDSLDEAATYIKKL 84
                    79**********************554555559**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.7023084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.44E-73588No hitNo description
Gene3DG3DSA:4.10.280.104.6E-123597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-103699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-63684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-63690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MDVNRSSSSS TAAEGRRSSA SNSSGGGASA AGLERKEIER KRRQHMKSLC VKLASLIPEE  60
YYSSKDTMTQ QDSLDEAATY IKKLKERVDE LQQKRSSAQL LAGMRGGGGG ASTSATTTTS  120
SGVGSEEADE EAMAAPPVVE VRHHHDGSSL DVVLVSSVAR PFKLHEVVTV LEEEGAEIIN  180
ANFSVVGRKI FYTIHSRAFS SRIGIEVSRV SERLRALVNR VAKGKRGYPT FSFKTST*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843ERKRRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277516e-59KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818150.11e-154transcription factor bHLH162-like isoform X2
TrEMBLA0A2S3HX411e-170A0A2S3HX41_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-121(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82936133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10586.13e-12bHLH family protein