PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E03649.11
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 199aa    MW: 21212.6 Da    PI: 6.804
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E03649.11genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.31.6e-093684654
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                     +e+Er+RR++++s   +L +l+P+ +  ++  ++  + L +A  YIk+L
  Pahal.E03649.11 36 KEIERKRRQHMKSLCVKLASLIPEEYYSSKDTMTQQDSLDEAATYIKKL 84
                     79**********************554555559**************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.7023084IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.18E-73588No hitNo description
Gene3DG3DSA:4.10.280.103.2E-123597IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.01E-103699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-63690IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.6E-73684IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDVNRSSSSS TAAEGRRSSA SNSSGGGASA AGLERKEIER KRRQHMKSLC VKLASLIPEE  60
YYSSKDTMTQ QDSLDEAATY IKKLKERVDE LQQKRSSAQL LAGMRGGGGG ASTSATTTTS  120
SGVGSEEADE EAMAAPPVVE VRHHHDGSSL DVVLVSSVAR PFKLHEVVTV LEEEGAEIIN  180
ANFSVVGRKI FYTIHSRL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13843ERKRRQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277515e-59KJ727751.1 Zea mays clone pUT5692 bHLH transcription factor (bHLH83) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818152.11e-141transcription factor bHLH162-like isoform X4
TrEMBLA0A2S3HX771e-139A0A2S3HX77_9POAL; Uncharacterized protein
STRINGPavir.Ea00786.1.p1e-109(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-10bHLH family protein