PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E03650.3

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

bHLH

Protein Properties

Length: 222aa MW: 23578.6 Da PI: 9.1758

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E03650.3	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	40	87	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-.STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskK.lsKaeiLekAveYIksL 54 +e+Er+RR++++s +L +l+Pk +s+ ++ L +A YIk+L Pahal.E03650.3 40 KEIERKRRQQMKSLCVKLASLIPKeE---YSRDaMTQLGSLDEAAAYIKKL 87 79********************55...88888*************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.588	34	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-12	39	102	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.09E-4	39	91	No hit	No description
SMART	SM00353	2.7E-6	40	93	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.4E-7	40	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-11	40	104	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MEMGAKKKSR SSDTATAGKR SSTSNNSSGG GATTPAVERK EIERKRRQQM KSLCVKLASL 60 IPKEEYSRDA MTQLGSLDEA AAYIKKLKER VDELQQKRSS AQLMAAATSG GVGGSAASTS 120 AASGSARSEG AAAEEAAEAP LVEVVHHQDD SSLDVVLISS VERPFKLHEV VTVLEEEGAE 180 IINANLSVTG RKIFHTIHCR AFSPRIGIEV SRVSERLRAL V*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	42	47	ERKRRQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818432.1	1e-156	transcription factor bHLH162-like
TrEMBL	A0A2S3HX22	1e-155	A0A2S3HX22_9POAL; Uncharacterized protein
STRING	Pavir.Ea00786.1.p	1e-93	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10586.1	2e-11	bHLH family protein

Link Out ? help Back to Top
Phytozome	Pahal.E03650.3