PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04034.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 319aa    MW: 34721.5 Da    PI: 6.7262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04034.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.41.8e-1463107147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W++eE+ +++da  ++G + Wk+I +++  ++t  q++s+ qky
   Pahal.E04034.2  63 REPWSAEEHGRFLDALLMFGRD-WKKIEEHVR-TKTTIQIRSHAQKY 107
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.25E-1757113IPR009057Homeodomain-like
PROSITE profilePS5129417.53458112IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-760114IPR009057Homeodomain-like
TIGRFAMsTIGR015576.2E-1661110IPR006447Myb domain, plants
SMARTSM007171.1E-862110IPR001005SANT/Myb domain
PfamPF002491.7E-1163107IPR001005SANT/Myb domain
CDDcd001675.44E-765108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGPSSSLAPL DMRVCVYIVQ GENLSAWVLG DSIASGPSRG EMERGNEAPG KKARKPYTMT  60
KPREPWSAEE HGRFLDALLM FGRDWKKIEE HVRTKTTIQI RSHAQKYFLK VQKLGLAAGL  120
PPAHPRRRFT MMEQQNSAAG SSAAAVPLLH GEPHSAPVAV PEMRCLDWAG VSASGIPAWL  180
NSDAQSQIAP PATLPGGSQF IGAPSFGSTS MVWAGSSTSG GSAIDSVQDE DEQIELPLSP  240
DDLHFAQVYR FVGDVFDPNT PIPVEAHLQK LKDMDDITVK TILLVLRNLE TNLSALQFEP  300
IRRLLSTYDP RRGLFGQL*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1069696e-66AK106969.1 Oryza sativa Japonica Group cDNA clone:002-119-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819439.10.0protein REVEILLE 8-like isoform X2
TrEMBLA0A2S3HY380.0A0A2S3HY38_9POAL; Uncharacterized protein
STRINGSi002704m1e-135(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.19e-52MYB_related family protein