PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04069.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 248aa    MW: 27040 Da    PI: 10.0154
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04069.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.5e-1066110554
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     h+e+ErrRR+riN  + +Lr+++P       + ++Ka+ L ++v+ +k L
  Pahal.E04069.1  66 HSEAERRRRERINAHLTTLRRMVPDT-----RQMDKATLLARVVDQVKLL 110
                     9************************8.....689***9999999977765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.4E-1352118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.58361110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1266123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.7E-866110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-1067116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048738.79E-7149215No hitNo description
Gene3DG3DSA:3.30.70.2602.7E-4149205No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MTPCQPLQEG KELQGLQPYD ACDPSVFIGP VLLPRQASSG PPAPPEMSSS SGSGRSATEA  60
RALKIHSEAE RRRRERINAH LTTLRRMVPD TRQMDKATLL ARVVDQVKLL KRKASEATQS  120
MALPPETNEV SIELHSGDNG GVMIYIKASI SCDDRPDLIA GLTQAFHGLR LRTVRADLTS  180
LGGRVQHVFV LCREEGWGSA GATLRSLKEA VRLALARVAS PEMAYGSSPF QSKRQRIIEP  240
RYSIMSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16974ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0640871e-136BT064087.1 Zea mays full-length cDNA clone ZM_BFc0137C17 mRNA, complete cds.
GenBankKJ7268691e-136KJ726869.1 Zea mays clone pUT3410 bHLH transcription factor (bHLH104) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004968277.11e-140transcription factor bHLH30
RefseqXP_004968280.11e-140transcription factor bHLH30
TrEMBLA0A3L6QYE81e-156A0A3L6QYE8_PANMI; Transcription factor bHLH30-like
STRINGPavir.Ea00439.1.p1e-147(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP33473678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25710.11e-28basic helix-loop-helix 32