PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04178.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 178aa    MW: 19601.7 Da    PI: 9.627
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04178.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822129.83.2e-40501632115
          DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr.kgskpleeaeaagssas.aspessl 94 
                     +s r+pt +ErEnn++RERrRR++aa+iyaGLRa+++y lpk+aD+n+Vl+ALc+eAG+ v+dDG++ r +g      a+    s++  ++ ss 
  Pahal.E04178.1  50 TSLRHPTPRERENNRQRERRRRQVAARIYAGLRAHAGYTLPKHADQNDVLRALCAEAGYHVDDDGNVTRlQGVFDG--AAGPSWSSDhHQKPSSR 142
                     789*****************************************************************95554444..33333333303334444 PP

          DUF822  95 qsslkssalaspvesysaspk 115
                     + ++++ +l+ p +  +  ++
  Pahal.E04178.1 143 SGTTEAATLQRPEQRRQEEEE 163
                     456666666666655555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.6E-3152135IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEVGDGREEG EAAAAVAMEV APVTGRRGCI RSTQGPWTVR RRGRGGGLTT SLRHPTPRER  60
ENNRQRERRR RQVAARIYAG LRAHAGYTLP KHADQNDVLR ALCAEAGYHV DDDGNVTRLQ  120
GVFDGAAGPS WSSDHHQKPS SRSGTTEAAT LQRPEQRRQE EEEAKLSLEL TLSFAYM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A7e-1273118392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B7e-1273118392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C7e-1273118392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D7e-1273118392437Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9477561e-119EU947756.1 Zea mays clone 356679 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025815736.11e-127protein BRASSINAZOLE-RESISTANT 2-like
TrEMBLA0A2S3HY921e-126A0A2S3HY92_9POAL; Uncharacterized protein
STRINGPavir.Eb00361.1.p3e-71(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132013032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19350.35e-15BES1 family protein