PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04233.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NF-YC
Protein Properties Length: 225aa    MW: 23880.7 Da    PI: 4.369
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04233.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC47.83.2e-151021831999
           NF-YC  19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaav.trtdifdflvdivprd 99 
                      +lP+ r+k+i+++d d+k++++ea  l++ a elf+  l+  ++  a    rr+++ + + aa  ++  + dfl+d  p +
  Pahal.E04233.1 102 PTLPVGRVKRIMRVDRDIKKVTSEATLLIAAATELFLGSLASGAYTAAARRGRRAVRAAHVRAAArAHRPTADFLLDCLPAE 183
                     579**********************************************************88762566799*****99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.102.5E-18102165IPR009072Histone-fold
SuperFamilySSF471133.35E-16103181IPR009072Histone-fold
PfamPF008081.8E-14103165IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MATAAAADEP TVVVEEPLGK EDERIDEPAE AMEQIAEEWE ETGEPAETIG QIEKEQVEAA  60
EPADPMEQVE EEHVEAAEPV EPMEQEAAVA EAEAEEGASL RPTLPVGRVK RIMRVDRDIK  120
KVTSEATLLI AAATELFLGS LASGAYTAAA RRGRRAVRAA HVRAAARAHR PTADFLLDCL  180
PAEVEAPRAR PAAGSAGCGG GGAREAKPLP RGTRRIDAFF QKVT*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9707731e-123EU970773.1 Zea mays clone 350567 histone-like transcription factor and archaeal histone family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819164.11e-153nuclear transcription factor Y subunit C-6 isoform X1
TrEMBLA0A2S3HYE01e-151A0A2S3HYE0_9POAL; Uncharacterized protein
STRINGPavir.J29091.1.p2e-87(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133422628