PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04261.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 501aa    MW: 51273.2 Da    PI: 7.4024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04261.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.21.9e-29247305259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  Pahal.E04261.1 247 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKQVQRCAEDTSILVTTYEGQHNHQ 305
                     69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-30231307IPR003657WRKY domain
SuperFamilySSF1182902.88E-26239307IPR003657WRKY domain
PROSITE profilePS5081127.485241307IPR003657WRKY domain
SMARTSM007741.8E-34246306IPR003657WRKY domain
PfamPF031062.8E-25248305IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MEVAVERPTP VKEEKRVDAK PEMAALGSAL PIVFESFPST QSDAGIKQEQ RTLEAAKAEM  60
GEVREENERL KTMLSRIVSQ YHSLHTHFLD VVKVHEQTAK AKLPVAPAPA SAADVDDPDD  120
LVSLSLGTRS NGARRKGHER SSSSSGTAET TADEGQLSLG LGIARGSGLS ADDDKASGAS  180
AAPVLNLSSD SSSAGDTAKP AQDADACPPG TARKSPSAGE GADDEVQQQA KKARVSVRVK  240
CNTPTMPDGC QWRKYGQKIS KGNPCPRAYY RCTVAPHCPV RKQVQRCAED TSILVTTYEG  300
QHNHQLPPTA TAMASTTSAA AAMLTSGSTS SSPASLAHGH HLPLAAAGLL GPTTMVSTAA  360
SCPTITLDLT TPAAPHSLMH SSSYAAAAAA GYDSKAVPAA WSSGYLAYGA APPSYYGKSS  420
PALGHLFGGG LGGSLRPEQL YGAQSYLQST SSLGGGHGAV APAVTDTLAK AITSDPSFQT  480
ALVAAITSVM GRGGGAAAQK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-21233308175WRKY transcription factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230239KKARVSVRVK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586050.0KU058605.1 UNVERIFIED: Panicum miliaceum WRKY19-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.10.0probable WRKY transcription factor 72
TrEMBLA0A2S3HYH00.0A0A2S3HYH0_9POAL; Uncharacterized protein
STRINGPavir.J22708.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP120812938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-43WRKY DNA-binding protein 72