PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04261.2
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 442aa    MW: 44877.9 Da    PI: 8.0403
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04261.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY93.51.6e-29188246259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+aed++++++tYeg+Hnh+
  Pahal.E04261.2 188 PDGCQWRKYGQKISKGNPCPRAYYRCTVApHCPVRKQVQRCAEDTSILVTTYEGQHNHQ 246
                     69**************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.809.3E-31172248IPR003657WRKY domain
SuperFamilySSF1182902.35E-26180248IPR003657WRKY domain
PROSITE profilePS5081127.485182248IPR003657WRKY domain
SMARTSM007741.8E-34187247IPR003657WRKY domain
PfamPF031062.4E-25189246IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MGEVREENER LKTMLSRIVS QYHSLHTHFL DVVKVHEQTA KAKLPVAPAP ASAADVDDPD  60
DLVSLSLGTR SNGARRKGHE RSSSSSGTAE TTADEGQLSL GLGIARGSGL SADDDKASGA  120
SAAPVLNLSS DSSSAGDTAK PAQDADACPP GTARKSPSAG EGADDEVQQQ AKKARVSVRV  180
KCNTPTMPDG CQWRKYGQKI SKGNPCPRAY YRCTVAPHCP VRKQVQRCAE DTSILVTTYE  240
GQHNHQLPPT ATAMASTTSA AAAMLTSGST SSSPASLAHG HHLPLAAAGL LGPTTMVSTA  300
ASCPTITLDL TTPAAPHSLM HSSSYAAAAA AGYDSKAVPA AWSSGYLAYG AAPPSYYGKS  360
SPALGHLFGG GLGGSLRPEQ LYGAQSYLQS TSSLGGGHGA VAPAVTDTLA KAITSDPSFQ  420
TALVAAITSV MGRGGGAAAQ K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-211872481777Probable WRKY transcription factor 4
2lex_A3e-211872481777Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171180KKARVSVRVK
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586050.0KU058605.1 UNVERIFIED: Panicum miliaceum WRKY19-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817880.10.0probable WRKY transcription factor 72
TrEMBLA0A2S3HYH00.0A0A2S3HYH0_9POAL; Uncharacterized protein
STRINGPavir.J22708.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.14e-43WRKY DNA-binding protein 72