PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04262.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family WRKY
Protein Properties Length: 237aa    MW: 24952 Da    PI: 7.3583
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04262.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.85.9e-30130188159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYG+K vk+s++pr+YYrC+ +gC vkk+ver+++dp++v++tY g Hnh 
  Pahal.E04262.1 130 LDDGFKWRKYGKKAVKSSPNPRNYYRCSAEGCGVKKRVERDRDDPRYVVTTYDGVHNHA 188
                     59********************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-31118190IPR003657WRKY domain
SuperFamilySSF1182901.96E-27122190IPR003657WRKY domain
PROSITE profilePS5081132.076125190IPR003657WRKY domain
SMARTSM007741.0E-33130189IPR003657WRKY domain
PfamPF031061.2E-23131187IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MAASLGLVGR EAYYAACSYP PTAGAASSSY LFPPELVADS GGAVMELPPP AAMADFCLPE  60
IMGARTPDYY CSPPAPVFAN GGAAAAENEM MNTSYVDCDG RMMMMSGSAG SGGRPPPRIG  120
FRTRSEVDVL DDGFKWRKYG KKAVKSSPNP RNYYRCSAEG CGVKKRVERD RDDPRYVVTT  180
YDGVHNHAVP SRGAQRPACS APLVAAPWSA PAAHCDPWGT QLHAAAAGAH SSESSY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-27120191778Probable WRKY transcription factor 4
2lex_A3e-27120191778Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU0586130.0KU058613.1 UNVERIFIED: Panicum miliaceum WRKY28-like gene, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818051.11e-172WRKY transcription factor WRKY24-like
TrEMBLA0A2S3HYH61e-171A0A2S3HYH6_9POAL; Uncharacterized protein
STRINGPavir.J08526.1.p1e-118(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44137206
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26170.19e-38WRKY DNA-binding protein 50