PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04275.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 365aa    MW: 38534.2 Da    PI: 8.5029
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04275.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.14.2e-13108152347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
   Pahal.E04275.1 108 PWTEEEHRMFLMGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 152
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.105.8E-4324IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129419.024101157IPR017930Myb domain
SuperFamilySSF466899.72E-17103157IPR009057Homeodomain-like
TIGRFAMsTIGR015578.9E-19104156IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.8E-12105151IPR009057Homeodomain-like
SMARTSM007172.6E-11105155IPR001005SANT/Myb domain
CDDcd001674.78E-9108153No hitNo description
PfamPF002491.1E-10108152IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MTRRCSHCSN NGHNSRTCPA RSAAGGGGVR LFGVRLTTAP APAAMKKSAS MSCIASSLGG  60
GSGGSSPAAG GGGGGRGGGD GGAGYVSDDP AHASCSTNGR AERKKGTPWT EEEHRMFLMG  120
LQKLGKGDWR GISRNFVVSR TPTQVASHAQ KYFIRQTNSS RRKRRSSLFD MVPEMPMEES  180
PAAVEQFTLQ NTQDEATSSN ELPTLHLGQQ KEAEFAKQQP TFQLSQHEDS ENAELPLPLP  240
DLEMNSSVPF KTIPVPTVPA FYPALVPVPL TLWPPSVAHV EEAGATHEIL KPTPLNGKEV  300
VKADDVVGMS KLSIGDASSG SMEPTALSLQ LNGSADTRQS AFHVSPPMNR PELSKRNSSP  360
IHAV*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382700.0BT038270.1 Zea mays full-length cDNA clone ZM_BFb0221P08 mRNA, complete cds.
GenBankEU9652590.0EU965259.1 Zea mays clone 284869 myb-related transcription activator mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025816777.10.0transcription factor MYBS3-like
RefseqXP_025816778.10.0transcription factor MYBS3-like
TrEMBLA0A2S3HYJ70.0A0A2S3HYJ7_9POAL; Uncharacterized protein
STRINGSb03g003270.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19393791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16350.13e-63MYB_related family protein