PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Pahal.E04292.1

Organism

Panicum hallii

Taxonomic ID

206008

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum

Family

C3H

Protein Properties

Length: 378aa MW: 40161 Da PI: 7.1431

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Pahal.E04292.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	26.7	9.7e-09	119	139	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++f++ G Ck+Gd C FaHg Pahal.E04292.1 119 ACPDFRK-GGCKRGDACEFAHG 139 7****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	2.3E-5	114	140	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.159	115	141	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.4E-6	118	141	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.1E-7	119	139	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	12	149	172	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.258	149	173	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006979	Biological Process	response to oxidative stress
GO:0009867	Biological Process	jasmonic acid mediated signaling pathway
GO:0010150	Biological Process	leaf senescence
GO:0005634	Cellular Component	nucleus
GO:0005886	Cellular Component	plasma membrane
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 378 aa Download sequence Send to blast
MMMMGEGVSV PPWSHHLPVS GVDVGGTTGG DEMTPYLLAA LRQYLPCNDA SADDDEEAAA 60 AAMAAGVDGY GSDEFRMYEF KVRRCARARS HDWTECPFAH PGEKARRRDP RKYHYSGTAC 120 PDFRKGGCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH TPDQLRVLPA 180 QQSSPRGAGA AASPLAESYD GSPLRRQAFE SYLTKSIMSS SPTSTLMSPP KSPPSESPPL 240 SPDGAAAFRR GSWPGVGSPV NEVLASLRQL RLSKANSSPA GGWSGYPSSA VAYGSPTAAG 300 LYSLPSTPTA MGGFMANLEP LDVSFGGCDE EPVQRVESGR ALRAKVFERL SREGAISGDA 360 AAAIGGPDVG WVSDLIN*

Sequence ? help Back to Top

Protein Sequence Length: 378 aa Download sequence Send to blast

MMMMGEGVSV PPWSHHLPVS GVDVGGTTGG DEMTPYLLAA LRQYLPCNDA SADDDEEAAA  60
AAMAAGVDGY GSDEFRMYEF KVRRCARARS HDWTECPFAH PGEKARRRDP RKYHYSGTAC  120
PDFRKGGCKR GDACEFAHGV FECWLHPARY RTQPCKDGTA CRRRVCFFAH TPDQLRVLPA  180
QQSSPRGAGA AASPLAESYD GSPLRRQAFE SYLTKSIMSS SPTSTLMSPP KSPPSESPPL  240
SPDGAAAFRR GSWPGVGSPV NEVLASLRQL RLSKANSSPA GGWSGYPSSA VAYGSPTAAG  300
LYSLPSTPTA MGGFMANLEP LDVSFGGCDE EPVQRVESGR ALRAKVFERL SREGAISGDA  360
AAAIGGPDVG WVSDLIN*

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in leaf senescence delay. May repress jasmonic acid (JA) signaling role in promoting leaf senescence. May regulate panicle development and pollination/fertilization process. {ECO:0000269\|PubMed:16778011}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817903.1	0.0	zinc finger CCCH domain-containing protein 2-like
Swissprot	Q9FU27	0.0	C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBL	A0A2S3HYP5	0.0	A0A2S3HYP5_9POAL; Uncharacterized protein
STRING	Pavir.Eb00253.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1578	34	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G19810.1	3e-83	C3H family protein

Link Out ? help Back to Top
Phytozome	Pahal.E04292.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Mebel AM,Kislov VV,Hayashi M Prediction of product branching ratios in the C(3P)+C2H2-->l-C3H+H/c-C3H+H/C3+H2 reaction using ab initio coupled clusters calculations extrapolated to the complete basis set combined with Rice-Ramsperger-Kassel-Marcus and radiationless transition theories. J Chem Phys, 2007. 126(20): p. 204310 [PMID:17552765] Miyazawa T,Shibata A,Nakagawa K,Tsuzuki T Anti-angiogenic function of tocotrienol. Asia Pac J Clin Nutr, 2008. 17 Suppl 1: p. 253-6 [PMID:18296349]