PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04294.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family MYB_related
Protein Properties Length: 293aa    MW: 30647.4 Da    PI: 10.6338
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04294.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.32.3e-15118162347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ +++ + ++lG+g+W+ I+r++ ++Rt+ q+ s+ qky
   Pahal.E04294.1 118 PWTEDEHRRFLAGLEKLGKGDWRGISRHFVTTRTPTQVASHAQKY 162
                      8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.581318IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129420.171111167IPR017930Myb domain
SuperFamilySSF466892.92E-18112168IPR009057Homeodomain-like
TIGRFAMsTIGR015578.1E-19114166IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.1E-11115161IPR009057Homeodomain-like
SMARTSM007171.5E-11115165IPR001005SANT/Myb domain
PfamPF002492.3E-12118162IPR001005SANT/Myb domain
CDDcd001675.34E-10118163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MARKCSSCGH NGHNSRTCSG HGRVSETGGG GGGVRLFGVQ LHVGPSSSPM KKCFSMDCLS  60
SAAPPAYYAA ALAASSSSPS VSSSSSLVSV EETAEKVNNG YLSDGLMGRA QERKKGVPWT  120
EDEHRRFLAG LEKLGKGDWR GISRHFVTTR TPTQVASHAQ KYFLRQSSLT QKKRRSSLFD  180
VVENAGRAAS SAPDAELPAL SLGISRPAAP SRVLPPTLSS LLPQCSAPTS RSGSGSTSPS  240
GIAAPKHRHP PSSLTPVSKT HQAPDLELKI STADHQTGSS PRTPFFGTIR VT*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00565DAPTransfer from AT5G56840Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9670991e-153EU967099.1 Zea mays clone 299455 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818314.10.0transcription factor MYBS3-like
TrEMBLA0A2S3HYJ50.0A0A2S3HYJ5_9POAL; Uncharacterized protein
STRINGPavir.Ea00361.1.p1e-142(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42313873
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.11e-47MYB_related family protein