PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.E04300.1
Organism
Panicum hallii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family Dof
Protein Properties Length: 242aa    MW: 24474 Da    PI: 9.3182
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.E04300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.41.3e-3744100359
          zf-Dof   3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59 
                      + l+cprC+s ntkfCyynny+lsqPryfC+aCrryWt+GGalrnvPvGgg+rk  
  Pahal.E04300.1  44 PEGLPCPRCESVNTKFCYYNNYNLSQPRYFCRACRRYWTRGGALRNVPVGGGTRKAT 100
                     57899*************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF027018.8E-334799IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.81747101IPR003851Zinc finger, Dof-type
ProDomPD0074783.0E-194992IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104985IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MVRCAADMEA GHQAAEGGAL AVVASVAPAA GGGRGGGAGG GREPEGLPCP RCESVNTKFC  60
YYNNYNLSQP RYFCRACRRY WTRGGALRNV PVGGGTRKAT PATRRKRPAS SPPEPAPPAA  120
GVALPPLTMS GPHGALLRQY GMPFPAPAMA SPLAAVDPDR RLLDLGGSFS SLIAAAPGPD  180
VVGGHFSAGF LVGGLAPAMV HSPAGAAPAA TLPPPPPPQQ QVSQALPEGL LWSMGWPDLS  240
I*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13341RGGGAGGGR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619501e-88BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds.
GenBankKJ7270131e-88KJ727013.1 Zea mays clone pUT3994 C2C2-DOF transcription factor (DOF7) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818172.11e-169dof zinc finger protein DOF1.7
SwissprotO821552e-34DOF17_ARATH; Dof zinc finger protein DOF1.7
TrEMBLA0A2S3HYK51e-168A0A2S3HYK5_9POAL; Uncharacterized protein
STRINGPavir.Ea00244.1.p5e-94(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28810.23e-25Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]